Man pages for lldelisle/usefulLDfunctionsGR
Functions That I Use Regularly Which depends on GenomicRanges
| bedGraphFromGR | Convert a GemomicRanges object (1-based close) in a dataframe... |
| filterByScore | Find the overlaps of GRangesList items to have only once each... |
| findAllOverlap | Get a dataframe from all possible pairwise overlaps from a... |
| findOverlapAsClusters | Get a dataframe summarizing the clusters created by overlaps... |
| getTSSinUCSCFormatFromEnsemblGTF | Get a GRange with TSS in UCSC format from a path to a gtf... |
| grFromBedFile | create a GenomicRanges object from a BED |
| grSortedSimplifiedFromNarrowPeak | create a GenomicRanges object from a narrowPeak with only one... |
| narrowPeakDFFromGR | create a data.frame from a GenomicRanges object from a... |
| overlap2GR | Get a dataframe from findOverlaps from a GRangesList with 2... |
