getTSSinUCSCFormatFromEnsemblGTF: Get a GRange with TSS in UCSC format from a path to a gtf...
In lldelisle/usefulLDfunctionsGR: Functions That I Use Regularly Which depends on GenomicRanges
Description
Usage
Arguments
Value
Examples
View source: R/myRTrackLayerBasicFunctions.R
Description
Get a GRange with TSS in UCSC format from a path to a gtf file in Ensembl format
Usage
1
Arguments
myGTF
a file path to a gtf file with ensembl chromosome annotation (no "chr")
Value
a Genomic Range with all TSS (entries might be duplicated) in UCSC format (with "chr")
Examples
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## Not run:
tss <- getTSSinUCSCFormatFromEnsemblGTF("Homo_sapiens.GRCh38.95.gtf.gz")
## End(Not run)
tss <- getTSSinUCSCFormatFromEnsemblGTF(paste0(system.file("tests", package="usefulLDfunctionsGR"),
"/Homo_sapiens.GRCh38.95_491firstLines.gtf.gz"))
lldelisle/usefulLDfunctionsGR documentation built on Nov. 25, 2019, 11:24 a.m.
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Description Usage Arguments Value Examples
View source: R/myRTrackLayerBasicFunctions.R
Description
Get a GRange with TSS in UCSC format from a path to a gtf file in Ensembl format
Usage
1 |
Arguments
myGTF |
a file path to a gtf file with ensembl chromosome annotation (no "chr") |
Value
a Genomic Range with all TSS (entries might be duplicated) in UCSC format (with "chr")
Examples
1 2 3 4 5 6 | ## Not run:
tss <- getTSSinUCSCFormatFromEnsemblGTF("Homo_sapiens.GRCh38.95.gtf.gz")
## End(Not run)
tss <- getTSSinUCSCFormatFromEnsemblGTF(paste0(system.file("tests", package="usefulLDfunctionsGR"),
"/Homo_sapiens.GRCh38.95_491firstLines.gtf.gz"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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