grFromBedFile: create a GenomicRanges object from a BED
In lldelisle/usefulLDfunctionsGR: Functions That I Use Regularly Which depends on GenomicRanges
Description
Usage
Arguments
Value
Examples
View source: R/myGRBasicFunctions.R
Description
create a GenomicRanges object from a BED
Usage
1
grFromBedFile(fn)
Arguments
fn
a path to the BED file (it can be gzipped) (0-based half open)
Value
a Genomic ranges with intervals (1-based closed)
Examples
1
2
3
4
5
tests_dir <- system.file("tests", package="usefulLDfunctionsGR")
test_bed <- file.path(tests_dir, "test6colWithHeader.bed")
# Load the bed with no header in a dataframe
grBED <- grFromBedFile(test_bed)
lldelisle/usefulLDfunctionsGR documentation built on Nov. 25, 2019, 11:24 a.m.
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Description Usage Arguments Value Examples
View source: R/myGRBasicFunctions.R
Description
create a GenomicRanges object from a BED
Usage
1 | grFromBedFile(fn)
|
Arguments
fn |
a path to the BED file (it can be gzipped) (0-based half open) |
Value
a Genomic ranges with intervals (1-based closed)
Examples
1 2 3 4 5 | tests_dir <- system.file("tests", package="usefulLDfunctionsGR")
test_bed <- file.path(tests_dir, "test6colWithHeader.bed")
# Load the bed with no header in a dataframe
grBED <- grFromBedFile(test_bed)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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