prevalence_tab: Calculates the presence or absence of a microorganism

In llrs/integration-helper: Facilitate the integration

Description

It takes into account only samples with more than 0.5% of relative presence of the microorganism

Usage

prevalence_tab(table, meta, columns)

Arguments

table	Input data with the samples in columns and microorganism in rows
meta	Metadata associated with those samples (it assumes they are in the same order as in table)
columns	Column to make contrasts from

Value

a list with the matrices of presence and absence

See Also

prevalence(), comb_prevalence()

llrs/integration-helper documentation built on Sept. 24, 2021, 10:57 a.m.