Study of mutational signatures using compositional data analysis (CoDA) techniques

addPseudoCounts | Add pseudocounts; renormalise |

Breast560 | Normalised exposures of 560 Breast Cancer genomes from the... |

cleanObject | To be added in the package |

compare_populations | Compare two groups |

comp_lda | It computes the LDA for categorical responses (??? need to... |

comp_lm | (ongoing) Linear regression with compositional data as the... |

comp_logistic | Performs logistic regression, as explained in the reference |

count_matrix | Retrieve count matrix from object of class sign. |

count_matrix-set | Assign count matrix from object of class sign |

createDendrogram | Create a dendrogram, using Aithchison distance, of the... |

deprecated_comp_logistic | Perform logistic regression |

hello | Hello, World! |

id-set | Add name to object of class sign or merged_compositional |

merged_compositional-class | Class whiuch inludes features of both metadata and mutational... |

merged_compositional_to_sign | Convert a 'sign' object to a 'merged_compositional_to_sign'... |

metadata | Retrieve count matrix from object of class sign. |

metadata-set | Assign metadata to object of class sign |

to_sign | Converts a matrix to a sign object |

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