modify_dataset: Modify the dataset, e.g. by changing BDL, transformating of...

In lm687/CompSign: Study of mutational signatures using compositional data analysis (CoDA) techniques

Modify the dataset, e.g. by changing BDL, transformating of the data, imputating values

Description

Modify the dataset, e.g. by changing BDL, transformating of the data, imputating values

Usage

modify_dataset(
  dataset_obj,
  model_arg,
  imputation_arg,
  transformation_arg,
  BDL_arg,
  output_arg
)

Arguments

dataset_obj:	dataset of type exposures_inputTMB
model_arg:	name of model that will be used in TMB
imputation_arg:	type of imputation (1em2, 1em4, 0, multLN, multRepl, robust)
transformation_arg:	type of transformation (ALR, ILR)
BDL_arg:	Below Detection Limit Threshold value
output_arg:	filename of output

lm687/CompSign documentation built on Feb. 1, 2024, 4:41 p.m.