R/process.R

In lmc297/bactaxR: Bacterial taxonomy construction and evaluation in R

# load sample fastANI data
#bactaxR_fastANI <- read.ANI(file = "data/bactaxR_fastani_output.txt")
# read phylogeny
#bactaxR_phylo <- read.newick(file = "data/bactaxR_phylogeny.nwk")
# read metadata
#bactaxR_metadata <- read_excel("data/sup_table_s1_genomes_ani.xlsx", skip = 1)
#bactaxR_data <- list(phylogeny = bactaxR_phylo, metadata = bactaxR_metadata,  ANI = bactaxR_fastANI)
#usethis::use_data(bactaxR_metadata, overwrite = T)