prepare_empirical_data: Prepare the Empirical Data

In lmullany/iddplotting: Aids in plotting COVID-19 model results with empirical data

Description

This function prepares the empirical data. Depending on source it will call functions to prepare the csse or usafacts data

Usage

prepare_empirical_data(
  empirical_source,
  csse_repo_path = NULL,
  filterdates = c("2020-03-01", "2030-03-01"),
  updategit = F
)

Arguments

empirical_source	source of empirical data.. must be 'csse','usafacts' or a custom file path
csse_repo_path	defaults to NULL, otherwise a path to local clone of JHU CSSE repo
filterdates	defaults to all dates forward from March 1st, 2020, but can be specifed with a vector of dates
updategit	defaults to FALSE; should the local csse git repo be queried for possible update?

Examples

prepare_empirical_data("usafacts", "jhudata/", c("2020-03-01", "2020-06-01"))
prepare_empirical_data("my_empirical_data.csv", filterdates = c("2020-03-01", "2020-06-01"))

lmullany/iddplotting documentation built on July 26, 2020, 8:05 p.m.