lmweber/spatzli: Functions for analyzing spatial transcriptomics data

Methods and visualizations for analyzing spatial transcriptomics data. Currently focused on data from the 10x Genomics Visium platform. Includes functions for preprocessing (quality control, filtering) and feature selection (spatially variable genes).

Getting started

Package details

Bioconductor views SingleCell
Maintainer
LicenseMIT + file LICENSE
Version0.0.1
URL https://github.com/lmweber/spatzli
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("lmweber/spatzli")
lmweber/spatzli documentation built on Sept. 16, 2020, 5:55 a.m.