README.md

spatzli

R build status

R package containing functions for analyzing spatial transcriptomics data.

These functions are used in our online textbook Orchestrating Spatial Transcriptomics Analysis with Bioconductor (OSTA) and other work.

Currently focused on data from the 10x Genomics Visium platform.

Currently includes functions for preprocessing (quality control, filtering) and feature selection (spatially variable genes). This will be extended over time.



lmweber/spatzli documentation built on Sept. 16, 2020, 5:55 a.m.