Files in lorecatta/DENVclimate
.Rbuildignore
.gitignore
DENVclimate.Rproj
DESCRIPTION
NAMESPACE
R/R0_function.R
R/calculate_annual_traits_R0_FT.R
R/calculate_central_estimate.R
R/calculate_m.R
R/get_covariate_scaling_factor.R
R/hello.R
R/mcmc_utils_all.R
R/plot_distributions.R
R/plot_thermal_responses.R
R/preds_vs_obs_scatter_plot.R
R/temp_functions_all.R
R/thermal_response_functions_basic.R
R/utilities.R
R0_model.stan
README.Rmd
README.md
data-raw/Aedes_prior_data.csv
data-raw/All_FOI_estimates_and_predictors.csv
data-raw/DATASET.R
data-raw/EIP_priors_2015-12-04.csv
data-raw/aegyptiDENVmodelTempData_2016-03-30.csv
data-raw/predictor_rank.csv
data/aa_EIP_priors.rda
data/aedes_aegypti_priors.rda
data/foi_data.rda
data/predictor_rank.rda
data/trait_data.rda
inst/extdata/jags-briere-EFD.bug
inst/extdata/jags-briere-PDR-prior.bug
inst/extdata/jags-briere-informative.bug
inst/extdata/jags-briere-trunc-b.bug
inst/extdata/jags-briere-trunc.bug
inst/extdata/jags-briere.bug
inst/extdata/jags-quad-neg-informative.bug
inst/extdata/jags-quad-neg.bug
man/average_boot_samples_dim1.Rd
man/df_to_list.Rd
man/hello.Rd
man/loop.Rd
man/loop_simplify.Rd
man/mean_trait.Rd
man/myR0.Rd
man/plot_thermal_responses_all_data.Rd
man/plot_thermal_responses_mean_data.Rd
man/preds_vs_obs_scatter_plot.Rd
man/preds_vs_obs_scatter_plot_2.Rd
man/save_plot.Rd
man/write_out_csv.Rd
man/write_out_rds.Rd
scripts/01_parameters_fit.R
scripts/02_parameters_fit.R
scripts/03_parameters_fit.R
scripts/04_parameters_fit.R
scripts/05_extract_temp_data.R
scripts/06_plot_obs_R0.R
scripts/07_reconstructing_time_series.R
scripts/08_predict_R0_from_constant_T.R
scripts/09_predict_R0_from_fluctuating_T.R
scripts/10_predict_R0_from_fluctuating_T.R
scripts/11_predict_R0_from_fluctuating_T.R
scripts/12_calculate_m.R
scripts/13_fit_R0_model.R
scripts/copy_files_over.R
scripts/plot_informative_priors.R
scripts/plot_vague_priors.R
scripts/test_stan_code.R
workflow.Rmd
