wrapper_to_replicate_R0_and_burden: Look up the impact of a transmission-reducing intervention

In lorecatta/DENVfoiMap: Runs the analysis of the paper on global dengue FOI mapping and prediction of intervention impact

Look up the impact of a transmission-reducing intervention

Description

The function look up the two R0 values, the number of infections, mild febrile cases and the number of hospitalized cases corresponding to a set of FOI predictions, following the application of a scaling factor representing the assumed reduction in transmission.

Usage

wrapper_to_replicate_R0_and_burden(foi_data, scaling_factor,
  FOI_to_Inf_list, FOI_to_C_list, FOI_to_HC_list, FOI_to_R0_1_list,
  FOI_to_R0_2_list, parms)

Arguments

foi_data	dataframe of processed admin unit level foi data.
scaling_factor	numeric scaling factor value (0-1)
FOI_to_Inf_list	list of FOI -> number of infections look up tables for different countries
FOI_to_C_list	list of FOI -> number of cases look up tables for different countries
FOI_to_HC_list	list of FOI -> number of hospitalized cases look up tables for different countries
FOI_to_R0_1_list	list of FOI -> R0 (assumption 1) look up tables for different countries
FOI_to_R0_2_list	list of FOI -> R0 (assumption 2) look up tables for different countries
parms	list of user-defined parameters.

lorecatta/DENVfoiMap documentation built on April 1, 2022, 4:05 p.m.