Man pages for lpagie/chromocounting
Compute OE Scores for Chromocount Experiments
| Bam2FragCounts | Import bam files and generate read counts per GATC fragment |
| bamToOE | Compute OE scores from (a set of) bamfiles. |
| fExp.mm10 | Expected readcounts (forw/rev) for mm10 GATC fragments |
| GATC.mpbl.reads.mm10 | GRanges object with all GATC fragments of mm10, plus mappable... |
| PreprocReadcounts | Preprocess readcounts in GATC.readcounts |
| SummarizeReadcounts | Compute OE scores from read counts |
