SummarizeReadcounts: Compute OE scores from read counts
In lpagie/chromocounting: Compute OE Scores for Chromocount Experiments
Description
Usage
Arguments
Details
Value
View source: R/fragLen_seqCompos_correction.R
Description
SummarizeReadcounts computes OE scores from read counts
Usage
1
SummarizeReadcounts(fExp, GATC.readcounts, binsize)
Arguments
fExp
Numeric vector, length 2x number of GATC fragments, specifies
for each possible forward and reverse read whether it is expected (ie,
mappable).
GATC.readcounts
GRanges object with GATC regions and readcounts (forw/rev/both) per sample.
binsize
Integer, either a single value or a vector of same length as number of chromosomes.
Details
extended description of function
Value
GRanges object; granges specify genomic regions of size bin.size, mcols specify computed OE scores
lpagie/chromocounting documentation built on May 21, 2019, 2:26 a.m.
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Description Usage Arguments Details Value
View source: R/fragLen_seqCompos_correction.R
Description
SummarizeReadcounts computes OE scores from read counts
Usage
1 | SummarizeReadcounts(fExp, GATC.readcounts, binsize)
|
Arguments
fExp |
Numeric vector, length 2x number of GATC fragments, specifies for each possible forward and reverse read whether it is expected (ie, mappable). |
GATC.readcounts |
GRanges object with GATC regions and readcounts (forw/rev/both) per sample. |
binsize |
Integer, either a single value or a vector of same length as number of chromosomes. |
Details
extended description of function
Value
GRanges object; granges specify genomic regions of size bin.size, mcols specify computed OE scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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