Bam2FragCounts | Import bam files and generate read counts per GATC fragment |
bamToOE | Compute OE scores from (a set of) bamfiles. |
fExp.mm10 | Expected readcounts (forw/rev) for mm10 GATC fragments |
GATC.mpbl.reads.mm10 | GRanges object with all GATC fragments of mm10, plus mappable... |
PreprocReadcounts | Preprocess readcounts in GATC.readcounts |
SummarizeReadcounts | Compute OE scores from read counts |
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