|Bam2FragCounts||Import bam files and generate read counts per GATC fragment|
|bamToOE||Compute OE scores from (a set of) bamfiles.|
|fExp.mm10||Expected readcounts (forw/rev) for mm10 GATC fragments|
|GATC.mpbl.reads.mm10||GRanges object with all GATC fragments of mm10, plus mappable...|
|PreprocReadcounts||Preprocess readcounts in GATC.readcounts|
|SummarizeReadcounts||Compute OE scores from read counts|
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