Files in lrutter/RNASeqVisualization
.Rbuildignore
.gitignore
All_leaves040615.rda
All_roots.rda
Analysis_Pmet/F_W_ALPHA1.jpg
Analysis_Pmet/F_W_ALPHA10.jpg
Analysis_Pmet/F_W_ALPHA3.jpg
Analysis_Pmet/F_W_ALPHA7.jpg
Analysis_Pmet/R_U_ALPHA1.jpg
Analysis_Pmet/R_U_ALPHA10.jpg
Analysis_Pmet/R_U_ALPHA3.jpg
Analysis_Pmet/R_U_ALPHA7.jpg
Analysis_Pmet/Significance.Rnw
Analysis_Pmet/Significance2.Rnw
CI-LM/CIBANDS.R
CI-LM/Ci-matrix-Soybean.R
CI-LM/Ci-matrix-render.R
CI-LM/Ci-render.R
CI-LM/FC-matrix-Soybean.R
CI-LM/Orth-matrix-Soybean.R
CI-LM/Pi-matrix-Soybean.R
CI-LM/Pi-matrix-render-Red.R
CI-LM/Pi-matrix-render.R
CI-LM/Regression.R
ClusterPCP.rda
Clustering_L120/L120_10.jpg
Clustering_L120/L120_11.jpg
Clustering_L120/L120_12.jpg
Clustering_L120/L120_13.jpg
Clustering_L120/L120_14.jpg
Clustering_L120/L120_15.jpg
Clustering_L120/L120_15_1.jpg
Clustering_L120/L120_15_1.txt
Clustering_L120/L120_15_10.jpg
Clustering_L120/L120_15_10.txt
Clustering_L120/L120_15_11.jpg
Clustering_L120/L120_15_11.txt
Clustering_L120/L120_15_12.jpg
Clustering_L120/L120_15_12.txt
Clustering_L120/L120_15_13.jpg
Clustering_L120/L120_15_13.txt
Clustering_L120/L120_15_14.jpg
Clustering_L120/L120_15_14.txt
Clustering_L120/L120_15_15.jpg
Clustering_L120/L120_15_15.txt
Clustering_L120/L120_15_2.jpg
Clustering_L120/L120_15_2.txt
Clustering_L120/L120_15_3.jpg
Clustering_L120/L120_15_3.txt
Clustering_L120/L120_15_4.jpg
Clustering_L120/L120_15_4.txt
Clustering_L120/L120_15_5.jpg
Clustering_L120/L120_15_5.txt
Clustering_L120/L120_15_6.jpg
Clustering_L120/L120_15_6.txt
Clustering_L120/L120_15_7.jpg
Clustering_L120/L120_15_7.txt
Clustering_L120/L120_15_8.jpg
Clustering_L120/L120_15_8.txt
Clustering_L120/L120_15_9.jpg
Clustering_L120/L120_15_9.txt
Clustering_L120/L120_16.jpg
Clustering_L120/L120_17.jpg
Clustering_L120/L120_18.jpg
Clustering_L120/L120_19.jpg
Clustering_L120/L120_2.jpg
Clustering_L120/L120_20.jpg
Clustering_L120/L120_21.jpg
Clustering_L120/L120_22.jpg
Clustering_L120/L120_23.jpg
Clustering_L120/L120_24.jpg
Clustering_L120/L120_25.jpg
Clustering_L120/L120_26.jpg
Clustering_L120/L120_27.jpg
Clustering_L120/L120_28.jpg
Clustering_L120/L120_29.jpg
Clustering_L120/L120_2_1.jpg
Clustering_L120/L120_2_1.txt
Clustering_L120/L120_2_2.jpg
Clustering_L120/L120_2_2.txt
Clustering_L120/L120_3.jpg
Clustering_L120/L120_30.jpg
Clustering_L120/L120_3_1.jpg
Clustering_L120/L120_3_1.txt
Clustering_L120/L120_3_2.jpg
Clustering_L120/L120_3_2.txt
Clustering_L120/L120_3_3.jpg
Clustering_L120/L120_3_3.txt
Clustering_L120/L120_4.jpg
Clustering_L120/L120_5.jpg
Clustering_L120/L120_6.jpg
Clustering_L120/L120_7.jpg
Clustering_L120/L120_8.jpg
Clustering_L120/L120_9.jpg
DESCRIPTION
DRDUq1s.Rdata
GSE61960_Pmet_TotalCounts.txt
L120.Rnw
NAMESPACE
OnRender/CI-clickVsSelect-Simple.R
OnRender/CI-clickVsSelect.R
OnRender/CI-matrix-render.R
OnRender/CI-matrix-renderPoints.R
OnRender/CI-matrix.R
OnRender/CI-select-Simple.R
OnRender/CI-works.R
OnRender/CI.R
OnRender/CI2.R
OnRender/volcano-matrix.R
PERMLINEUP/PermLineup_CS1CS2/Correct.csv
PERMLINEUP/PermLineup_CS1CS2/Gene1.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene10.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene100.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene11.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene12.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene13.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene14.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene15.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene16.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene17.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene18.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene19.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene2.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene20.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene21.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene22.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene23.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene24.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene25.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene26.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene27.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene28.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene29.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene3.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene30.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene31.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene32.jpg
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PERMLINEUP/PermLineup_CS1CS2/Gene55.jpg
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PERMLINEUP/PermLineup_CS1CS2/Gene59.jpg
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PERMLINEUP/PermLineup_CS1CS2/Gene61.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene62.jpg
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PERMLINEUP/PermLineup_CS1CS2/Gene65.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene66.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene67.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene68.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene69.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene7.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene70.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene71.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene72.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene73.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene74.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene75.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene76.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene77.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene78.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene79.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene8.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene80.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene81.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene82.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene83.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene84.jpg
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PERMLINEUP/PermLineup_CS1CS2/Gene96.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene97.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene98.jpg
PERMLINEUP/PermLineup_CS1CS2/Gene99.jpg
PERMLINEUP/PermLineup_CS1CS2/Permutations.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG1.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG10.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG2.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG3.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG4.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG5.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG6.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG7.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG8.csv
PERMLINEUP/PermLineup_CS1CS2/TopDEG9.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/Correct.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene1.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene10.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene100.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene11.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene12.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene13.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene14.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene15.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene16.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene17.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene18.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene19.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene2.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene20.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene21.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene22.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene23.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene24.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene25.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene26.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene27.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene28.jpg
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PERMLINEUP/PermLineup_CS1CS2_Ind/Gene3.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Gene30.jpg
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PERMLINEUP/PermLineup_CS1CS2_Ind/Gene99.jpg
PERMLINEUP/PermLineup_CS1CS2_Ind/Permutations.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG1.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG10.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG2.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG3.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG4.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG5.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG6.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG7.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG8.csv
PERMLINEUP/PermLineup_CS1CS2_Ind/TopDEG9.csv
PERMLINEUP/PermLineup_CS1CS3/Correct.csv
PERMLINEUP/PermLineup_CS1CS3/Gene1.jpg
PERMLINEUP/PermLineup_CS1CS3/Gene10.jpg
PERMLINEUP/PermLineup_CS1CS3/Gene100.jpg
PERMLINEUP/PermLineup_CS1CS3/Gene11.jpg
PERMLINEUP/PermLineup_CS1CS3/Gene12.jpg
PERMLINEUP/PermLineup_CS1CS3/Gene13.jpg
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PERMLINEUP/PermLineup_NP/TopDEG1.csv
PERMLINEUP/PermLineup_NP/TopDEG10.csv
PERMLINEUP/PermLineup_NP/TopDEG2.csv
PERMLINEUP/PermLineup_NP/TopDEG3.csv
PERMLINEUP/PermLineup_NP/TopDEG4.csv
PERMLINEUP/PermLineup_NP/TopDEG5.csv
PERMLINEUP/PermLineup_NP/TopDEG6.csv
PERMLINEUP/PermLineup_NP/TopDEG7.csv
PERMLINEUP/PermLineup_NP/TopDEG8.csv
PERMLINEUP/PermLineup_NP/TopDEG9.csv
PERMLINEUP/PermLineup_NP_Ind/Correct.csv
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PERMLINEUP/PermLineup_NP_Ind/Gene100.jpg
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PERMLINEUP/PermLineup_NP_Ind/Gene98.jpg
PERMLINEUP/PermLineup_NP_Ind/Gene99.jpg
PERMLINEUP/PermLineup_NP_Ind/Permutations.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG1.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG10.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG2.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG3.csv
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PERMLINEUP/PermLineup_NP_Ind/TopDEG6.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG7.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG8.csv
PERMLINEUP/PermLineup_NP_Ind/TopDEG9.csv
PERMLINEUP/PermLineup_Pmet_FW/Correct.csv
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PERMLINEUP/PermLineup_Pmet_FW/Gene98.jpg
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PERMLINEUP/PermLineup_Pmet_FW/Permutations.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG1.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG10.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG11.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG12.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG13.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG14.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG15.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG16.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG17.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG18.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG19.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG2.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG20.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG3.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG4.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG5.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG6.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG7.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG8.csv
PERMLINEUP/PermLineup_Pmet_FW/TopDEG9.csv
PERMLINEUP/PermLineup_Pmet_FW_Ind/Correct.csv
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ShinyPlotly/eechidna-master/man/aec_carto_f.Rd
ShinyPlotly/eechidna-master/man/aec_carto_join_f.Rd
ShinyPlotly/eechidna-master/man/aec_extract_f.Rd
ShinyPlotly/eechidna-master/man/circle.Rd
ShinyPlotly/eechidna-master/man/complete_color.Rd
ShinyPlotly/eechidna-master/man/dorling.Rd
ShinyPlotly/eechidna-master/man/echidnaR-package.Rd
ShinyPlotly/eechidna-master/man/getElectorateShapes.Rd
ShinyPlotly/eechidna-master/man/hexDat.Rd
ShinyPlotly/eechidna-master/man/launchApp.Rd
ShinyPlotly/eechidna-master/man/nat_data.Rd
ShinyPlotly/eechidna-master/man/nat_data_cart.Rd
ShinyPlotly/eechidna-master/man/nat_map.Rd
ShinyPlotly/eechidna-master/vignettes/GeneralPollingPlaces2013.csv
ShinyPlotly/eechidna-master/vignettes/SenateSenatorsElected2013.csv
ShinyPlotly/eechidna-master/vignettes/exploring-census-data.Rmd
ShinyPlotly/eechidna-master/vignettes/exploring-election-data.Rmd
ShinyPlotly/eechidna-master/vignettes/getting-ozShapefiles.Rmd
ShinyPlotly/eechidna-master/vignettes/plotting-electorates.Rmd
ShinyPlotly/eechidna-master/vignettes/plotting-polling-stns.Rmd
data/All_leaves040615.rda
data/All_roots.rda
data/All_wasp.rda
data/GSE61857_Cotyledon_normalized.txt.gz
data/GSE61857_Leaf_normalized.txt.gz
data/GSE61960_Pmet_TotalCounts.txt.gz
data/Pmet.rda
data/bindataL120.Rda
data/makeBindDatL120.R
data/makeL120pval.R
data/metrics.Rda
data/pasilla.R
geneList.rda
ggplotCheatSheet.R
helpMessageShiny.R
leavesDat.Rda
listQuestion.R
makeLeavesDat.R
man/allFunctions.Rd
man/column_is_character.Rd
man/ggparcoord.Rd
man/ggscatmat.Rd
man/lowertriangle.Rd
man/scag_order.Rd
man/scatmat.Rd
man/singleClassOrder.Rd
man/skewness.Rd
man/uppertriangle.Rd
plotlyHexPoint/anotateBoxPCP.R
plotlyHexPoint/anotateGGHexPlot.R
plotlyHexPoint/anotateGGHexPlot_Work.R
plotlyHexPoint/anotateGGHexPlot_Work2.R
plotlyHexPoint/anotateHexPlot.R
plotlyHexPoint/anotatePlot.R
plotlyHexPoint/exJS.R
plotlyHexPoint/pointColorMatrix.R
plotlyHexPoint/soDrawPointMatrix-Automated.R
plotlyHexPoint/soDrawPointMatrix-Automated2.R
plotlyHexPoint/soDrawPointMatrix.R
plotlyHexPoint/soGGHexPlot.R
plotlyHexPoint/soPlotPoint.R
plotlyHexPoint/soPlotPointScatMat.R
popUpMessageShiny.R
