return_links: return_links
In lubianat/zelda: Zelda finds Links
Description
Usage
Arguments
Value
Examples
Description
zelda Takes two lists of genes and finds the receptor-ligand relations (links) between them.
Plots a bipartite plot of the found genes.
Returns a bipartite network of the connections.
Usage
1
return_links(receptors, ligands, database = "ramilowski_links")
Arguments
receptors
A list of genes containing putative receptors
ligands
A list of genes containg putative ligands
database
The database to be used to find the links. Defaults to "ramilowski_links".
Other options: "cellphone_db_links"; "all"
Value
Returns a dataframe with the lists found in the databases.
Examples
1
2
3
4
receptor_candidates <- c("CD3", "AIF", "CCR3", "CXCR3")
ligand_candidates <- c("TP53", "NFKB1", "CXCL9")
links <- return_links(receptor_candidates, ligand_candidates, database = "all")
head(links)
lubianat/zelda documentation built on Dec. 5, 2019, 3:26 a.m.
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Description Usage Arguments Value Examples
Description
zelda Takes two lists of genes and finds the receptor-ligand relations (links) between them. Plots a bipartite plot of the found genes. Returns a bipartite network of the connections.
Usage
1 | return_links(receptors, ligands, database = "ramilowski_links")
|
Arguments
receptors |
A list of genes containing putative receptors |
ligands |
A list of genes containg putative ligands |
database |
The database to be used to find the links. Defaults to "ramilowski_links". Other options: "cellphone_db_links"; "all" |
Value
Returns a dataframe with the lists found in the databases.
Examples
1 2 3 4 | receptor_candidates <- c("CD3", "AIF", "CCR3", "CXCR3")
ligand_candidates <- c("TP53", "NFKB1", "CXCL9")
links <- return_links(receptor_candidates, ligand_candidates, database = "all")
head(links)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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