lucgar/synRNASeqNet: Synthetic RNA-Seq Network Generation and Mutual Information Estimates

It implements various estimators of mutual information, such as the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, the shrinkage estimator, and the Chao-Shen estimator. It also offers wrappers to the kNN and kernel density estimators. Furthermore, it provides various index of performance evaluation such as precision, recall, FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way of generating synthetic RNA-Seq Network with known dependence structure.

Getting started

Package details

AuthorLuciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli
MaintainerLuciano Garofano <[email protected]>
LicenseGPL (>= 3)
Version1.0
URL https://github.com/lucgar/synRNASeqNet
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("lucgar/synRNASeqNet")
lucgar/synRNASeqNet documentation built on May 21, 2017, 3:39 p.m.