Files in luciansmith/copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.
DESCRIPTION
NAMESPACE
R/addArmlines.r
R/addChromlines.r
R/addToFreqPlot.r
R/addToPlot.r
R/adjustPos.r
R/adjustSeg.r
R/adjustSegPos.r
R/aspcf.r
R/callAberrations.r
R/checkAndRetrievePlotInput.r
R/checkChrom.r
R/checkSampleID.r
R/checkSegments.r
R/checkWinsoutliers.r
R/chromMax.r
R/chromPattern.r
R/colorSetup.r
R/connectSeg.r
R/convert_unit.r
R/findNN.r
R/framedim.r
R/get.seglim.r
R/getArmandChromStop.r
R/getArms.r
R/getCol.r
R/getFilename.r
R/getFreqData.r
R/getFreqParameters.r
R/getGRangesFormat.r
R/getGlobPos.r
R/getGlobal.xlim.r
R/getHeatParameters.r
R/getMad.r
R/getPlotParameters.r
R/getPlotSymbols.r
R/getUnisegFormat.r
R/get_xticks.r
R/get_yticks.r
R/getx.r
R/handleMissing.r
R/imputeMissing.R
R/interpolate.pcf.r
R/is_multiseg.r
R/medianFilter.r
R/multipcf.r
R/numericArms.r
R/numericChrom.r
R/pcf.r
R/pcfPlain.r
R/plotAberration.r
R/plotAllele.r
R/plotChrom.r
R/plotCircle.r
R/plotFreq.r
R/plotGamma.r
R/plotGenome.r
R/plotHeatmap.r
R/plotIdeogram.r
R/plotObs.r
R/plotSample.r
R/plotSegments.r
R/pullOutContent.r
R/selectSegments.r
R/separateChrom.r
R/subsetData.r
R/subsetSegments.r
R/sysdata.rda
R/updateFreqParameters.r
R/updatePlotParameters.r
R/winsorize.r
data/BAF.rda
data/logR.rda
data/lymphoma.rda
data/micma.rda
inst/CITATION
inst/NEWS
man/SNPdata.rd
man/aspcf.rd
man/callAberrations.rd
man/getGRangesFormat.rd
man/imputeMissing.Rd
man/interpolate.pcf.rd
man/lymphoma.rd
man/micma.rd
man/multipcf.rd
man/pcf.rd
man/pcfPlain.rd
man/plotAberration.rd
man/plotAllele.rd
man/plotChrom.Rd
man/plotCircle.rd
man/plotFreq.Rd
man/plotGamma.rd
man/plotGenome.Rd
man/plotHeatmap.Rd
man/plotSample.Rd
man/selectSegments.rd
man/subsetData.Rd
man/subsetSegments.Rd
man/winsorize.rd
vignettes/copynumber.rnw
vignettes/overview.pdf
