API for luisdamiano/BayesHMM
Full Bayesian Inference for Hidden Markov Models

Global functions
+	Man page
+.Density	Man page
BayesHMM	Man page
BayesHMM-package	Man page
Bernoulli	Man page
Beta	Man page
Binomial	Man page
Categorical	Man page
Cauchy	Man page
CholeskyLKJCor	Man page
Density	Man page
DensityList	Man page
Dirichlet	Man page
DiscreteDensity	Man page
Exponential	Man page
GammaDensity	Man page
Gaussian	Man page
ImproperUniform	Man page
InitialFixed	Man page
InitialSoftmax	Man page
InverseWishart	Man page
LinkDensity	Man page
MVGaussian	Man page
MVGaussianCholeskyCor	Man page
MVStudent	Man page
Multinomial	Man page
MultivariateDensity	Man page
MultivariateDiscreteDensity	Man page
NegativeBinomial	Man page
NegativeBinomialLocation	Man page
Optimization	Man page
Poisson	Man page
PriorOnlyDensity	Man page
PriorOnlyMultivariateDensity	Man page
RegBernoulliLogit	Man page
RegBinomialLogit	Man page
RegBinomialProbit	Man page
RegCategoricalSoftmax	Man page
RegGaussian	Man page
Specification	Man page
Student	Man page
TransitionFixed	Man page
TransitionSoftmax	Man page
Wishart	Man page
block_data	Man page
block_data.Density	Man page
block_data.DiscreteDensity	Man page
block_data.RegBernoulliLogit	Man page
block_data.RegBinomialLogit	Man page
block_data.RegBinomialProbit	Man page
block_data.RegCategoricalSoftmax	Man page
block_data.RegGaussian	Man page
block_data.Specification	Man page
block_functions	Man page
block_functions.Specification	Man page
block_generated	Man page
block_generated.Specification	Man page
block_parameters	Man page
block_parameters.Specification	Man page
block_target	Man page
block_target.Specification	Man page
block_tdata	Man page
block_tdata.Specification	Man page
block_tparameters	Man page
block_tparameters.Specification	Man page
browse_model	Man page
browse_model.Optimization	Man page
browse_model.Specification	Man page
browse_model.stanfit	Man page
browse_model.stanmodel	Man page
classify_alpha	Man page
classify_alpha.Optimization	Man page
classify_alpha.stanfit	Man page
classify_gamma	Man page
classify_gamma.Optimization	Man page
classify_gamma.stanfit	Man page
classify_quantity	Man page
classify_zstar	Man page
classify_zstar.Optimization	Man page
classify_zstar.stanfit	Man page
compile	Man page
compile.Specification	Man page
constants	Man page
constants.Binomial	Man page
constants.Categorical	Man page
constants.Density	Man page
constants.Multinomial	Man page
constants.RegBinomialLogit	Man page
constants.RegBinomialProbit	Man page
constants.RegCategoricalSoftmax	Man page
draw_samples	Man page
draw_samples.Optimization	Man page
draw_samples.Specification	Man page
draw_samples.stanfit	Man page
draw_samples.stanmodel	Man page
explain	Man page
explain.Specification	Man page
explain_density	Man page
explain_density.Density	Man page
explain_density.DensityList	Man page
explain_density.InitialFixed	Man page
explain_density.InitialSoftmax	Man page
explain_density.TransitionFixed	Man page
explain_density.TransitionSoftmax	Man page
explain_initial	Man page
explain_initial.Specification	Man page
explain_observation	Man page
explain_observation.Specification	Man page
explain_transition	Man page
explain_transition.Specification	Man page
extract	Man page
extract_K	Man page
extract_R	Man page
extract_T	Man page
extract_alpha	Man page
extract_best	Man page
extract_data	Man page
extract_date	Man page
extract_date.Optimization	Man page
extract_date.stanfit	Man page
extract_diagnostics	Man page
extract_diagnostics.stanfit	Man page
extract_filename	Man page
extract_gamma	Man page
extract_grid	Man page
extract_grid.Optimization	Man page
extract_grid.OptimizationList	Man page
extract_model	Man page
extract_n_chains	Man page
extract_n_chains.stanfit	Man page
extract_n_iterations	Man page
extract_n_iterations.stanfit	Man page
extract_n_thin	Man page
extract_n_thin.stanfit	Man page
extract_n_warmup	Man page
extract_n_warmup.stanfit	Man page
extract_obs_parameters	Man page
extract_parameter_names	Man page
extract_parameter_names.Optimization	Man page
extract_parameter_names.stanfit	Man page
extract_parameters	Man page
extract_quantity	Man page
extract_quantity.Optimization	Man page
extract_quantity.stanfit	Man page
extract_sample_size	Man page
extract_sample_size.stanfit	Man page
extract_seed	Man page
extract_seed.Optimization	Man page
extract_seed.stanfit	Man page
extract_spec	Man page
extract_stanmodel	Man page
extract_stanmodel.Optimization	Man page
extract_stanmodel.stanfit	Man page
extract_stanmodel.stanmodel	Man page
extract_time	Man page
extract_time.Optimization	Man page
extract_time.stanfit	Man page
extract_y	Man page
extract_ypred	Man page
extract_ysim	Man page
extract_zpred	Man page
extract_zsim	Man page
extract_zstar	Man page
fit	Man page
fit.Optimization	Man page
fit.Specification	Man page
fit.stanfit	Man page
fit.stanmodel	Man page
fixedParameters	Man page
fixedParameters.Bernoulli	Man page
fixedParameters.Beta	Man page
fixedParameters.Binomial	Man page
fixedParameters.Categorical	Man page
fixedParameters.Cauchy	Man page
fixedParameters.Dirichlet	Man page
fixedParameters.Exponential	Man page
fixedParameters.GammaDensity	Man page
fixedParameters.Gaussian	Man page
fixedParameters.InitialFixed	Man page
fixedParameters.InitialSoftmax	Man page
fixedParameters.MVGaussian	Man page
fixedParameters.MVGaussianCholeskyCor	Man page
fixedParameters.MVStudent	Man page
fixedParameters.Multinomial	Man page
fixedParameters.NegativeBinomial	Man page
fixedParameters.NegativeBinomialLocation	Man page
fixedParameters.Poisson	Man page
fixedParameters.PriorOnlyDensity	Man page
fixedParameters.RegBernoulliLogit	Man page
fixedParameters.RegBinomialLogit	Man page
fixedParameters.RegBinomialProbit	Man page
fixedParameters.RegCategoricalSoftmax	Man page
fixedParameters.RegGaussian	Man page
fixedParameters.Student	Man page
fixedParameters.TransitionFixed	Man page
fixedParameters.TransitionSoftmax	Man page
freeParameters	Man page
freeParameters.Bernoulli	Man page
freeParameters.Beta	Man page
freeParameters.Binomial	Man page
freeParameters.Categorical	Man page
freeParameters.Cauchy	Man page
freeParameters.Dirichlet	Man page
freeParameters.Exponential	Man page
freeParameters.GammaDensity	Man page
freeParameters.Gaussian	Man page
freeParameters.InitialFixed	Man page
freeParameters.InitialSoftmax	Man page
freeParameters.MVGaussian	Man page
freeParameters.MVGaussianCholeskyCor	Man page
freeParameters.MVStudent	Man page
freeParameters.Multinomial	Man page
freeParameters.NegativeBinomial	Man page
freeParameters.NegativeBinomialLocation	Man page
freeParameters.Poisson	Man page
freeParameters.PriorOnlyDensity	Man page
freeParameters.RegBernoulliLogit	Man page
freeParameters.RegBinomialLogit	Man page
freeParameters.RegBinomialProbit	Man page
freeParameters.RegCategoricalSoftmax	Man page
freeParameters.RegGaussian	Man page
freeParameters.Student	Man page
freeParameters.TransitionFixed	Man page
freeParameters.TransitionSoftmax	Man page
generated	Man page
generated.Bernoulli	Man page
generated.Beta	Man page
generated.Binomial	Man page
generated.Categorical	Man page
generated.Cauchy	Man page
generated.Dirichlet	Man page
generated.Exponential	Man page
generated.GammaDensity	Man page
generated.Gaussian	Man page
generated.MVGaussian	Man page
generated.MVGaussianCholeskyCor	Man page
generated.MVStudent	Man page
generated.Multinomial	Man page
generated.NegativeBinomial	Man page
generated.NegativeBinomialLocation	Man page
generated.Poisson	Man page
generated.PriorOnlyDensity	Man page
generated.RegBernoulliLogit	Man page
generated.RegBinomialLogit	Man page
generated.RegBinomialProbit	Man page
generated.RegCategoricalSoftmax	Man page
generated.RegGaussian	Man page
generated.Student	Man page
getFixedParameters	Man page
getFixedParameters.Density	Man page
getFreeParameters	Man page
getFreeParameters.Density	Man page
getFreeParameters.PriorOnlyDensity	Man page
getParameterNames	Man page
getParameterNames.Bernoulli	Man page
getParameterNames.Beta	Man page
getParameterNames.Binomial	Man page
getParameterNames.Categorical	Man page
getParameterNames.Cauchy	Man page
getParameterNames.Density	Man page
getParameterNames.Dirichlet	Man page
getParameterNames.Exponential	Man page
getParameterNames.GammaDensity	Man page
getParameterNames.Gaussian	Man page
getParameterNames.InitialFixed	Man page
getParameterNames.InitialSoftmax	Man page
getParameterNames.MVGaussian	Man page
getParameterNames.MVGaussianCholeskyCor	Man page
getParameterNames.MVStudent	Man page
getParameterNames.Multinomial	Man page
getParameterNames.NegativeBinomial	Man page
getParameterNames.NegativeBinomialLocation	Man page
getParameterNames.Poisson	Man page
getParameterNames.PriorOnlyDensity	Man page
getParameterNames.RegBernoulliLogit	Man page
getParameterNames.RegBinomialLogit	Man page
getParameterNames.RegBinomialProbit	Man page
getParameterNames.RegCategoricalSoftmax	Man page
getParameterNames.RegGaussian	Man page
getParameterNames.Student	Man page
getParameterNames.TransitionFixed	Man page
getParameterNames.TransitionSoftmax	Man page
get_current_theme	Man page
get_default_theme	Man page
get_plot_theme	Man page
get_print_settings	Man page
hmm	Man page
is.Density	Man page
is.DensityList	Man page
is.FixedInitial	Man page
is.FixedInitial.Density	Man page
is.FixedInitial.InitialFixed	Man page
is.FixedInitial.Specification	Man page
is.FixedTransition	Man page
is.FixedTransition.Density	Man page
is.FixedTransition.Specification	Man page
is.FixedTransition.TransitionFixed	Man page
is.Specification	Man page
is.TVInitial	Man page
is.TVInitial.Density	Man page
is.TVInitial.InitialSoftmax	Man page
is.TVInitial.Specification	Man page
is.TVTransition	Man page
is.TVTransition.Density	Man page
is.TVTransition.Specification	Man page
is.TVTransition.TransitionSoftmax	Man page
is.discrete	Man page
is.discrete.Density	Man page
is.discrete.DensityList	Man page
is.discrete.DiscreteDensity	Man page
is.discrete.Specification	Man page
is.equal	Man page
is.equal.Density	Man page
is.link	Man page
is.link.Density	Man page
is.link.LinkDensity	Man page
is.multivariate	Man page
is.multivariate.Density	Man page
is.multivariate.DensityList	Man page
is.multivariate.MultivariateDensity	Man page
is.multivariate.Specification	Man page
is.ordered	Man page
is.ordered.Density	Man page
is.stanfit	Man page
is.stanoptim	Man page
link	Man page
link.Density	Man page
link.InitialFixed	Man page
link.InitialSoftmax	Man page
link.TransitionFixed	Man page
link.TransitionSoftmax	Man page
load_theme	Man page
logLike	Man page
logLike.Bernoulli	Man page
logLike.Beta	Man page
logLike.Binomial	Man page
logLike.Categorical	Man page
logLike.Cauchy	Man page
logLike.Dirichlet	Man page
logLike.Exponential	Man page
logLike.GammaDensity	Man page
logLike.Gaussian	Man page
logLike.MVGaussian	Man page
logLike.MVGaussianCholeskyCor	Man page
logLike.MVStudent	Man page
logLike.Multinomial	Man page
logLike.NegativeBinomial	Man page
logLike.NegativeBinomialLocation	Man page
logLike.Poisson	Man page
logLike.PriorOnlyDensity	Man page
logLike.RegBernoulliLogit	Man page
logLike.RegBinomialLogit	Man page
logLike.RegBinomialProbit	Man page
logLike.RegCategoricalSoftmax	Man page
logLike.RegGaussian	Man page
logLike.Student	Man page
make_text_header	Man page
make_text_line	Man page
make_text_subheader	Man page
match_parameter_names	Man page
mixture	Man page
modify_theme_entry	Man page
noLogLike	Man page
noLogLike.Density	Man page
optimizing	Man page
optimizing.Optimization	Man page
optimizing.Specification	Man page
optimizing.stanfit	Man page
optimizing.stanmodel	Man page
optimizing_all	Man page
optimizing_best	Man page
optimizing_run	Man page
parameters	Man page
plot_ppredictive	Man page
plot_ppredictive.stanfit	Man page
plot_series	Man page
plot_state_probability	Man page
posterior_intervals	Man page
posterior_mode	Man page
print.Density	Man page
print.Optimization	Man page
print.Specification	Man page
print.stanfit	Man page
prior	Man page
prior.Bernoulli	Man page
prior.Beta	Man page
prior.Binomial	Man page
prior.Categorical	Man page
prior.Cauchy	Man page
prior.CholeskyLKJCor	Man page
prior.Dirichlet	Man page
prior.Exponential	Man page
prior.GammaDensity	Man page
prior.Gaussian	Man page
prior.ImproperUniform	Man page
prior.InitialFixed	Man page
prior.InitialSoftmax	Man page
prior.InverseWishart	Man page
prior.MVGaussian	Man page
prior.MVGaussianCholeskyCor	Man page
prior.MVStudent	Man page
prior.Multinomial	Man page
prior.NegativeBinomial	Man page
prior.NegativeBinomialLocation	Man page
prior.Poisson	Man page
prior.RegBernoulliLogit	Man page
prior.RegBinomialLogit	Man page
prior.RegBinomialProbit	Man page
prior.RegCategoricalSoftmax	Man page
prior.RegGaussian	Man page
prior.Student	Man page
prior.TransitionFixed	Man page
prior.TransitionSoftmax	Man page
prior.Wishart	Man page
run	Man page
run.Specification	Man page
select_all_parameters	Man page
select_initial_parameters	Man page
select_obs_parameters	Man page
select_parameters	Man page
select_transition_parameters	Man page
sim	Man page
sim.Optimization	Man page
sim.Specification	Man page
sim.stanfit	Man page
sim.stanmodel	Man page
specify	Man page
string_simplify	Man page
theme	Man page
validate_calibration	Man page
write_chunks	Man page
write_chunks.Specification	Man page
write_model	Man page
write_model.Specification	Man page