API for luisdamiano/BayesHMM
Full Bayesian Inference for Hidden Markov Models

Global functions
+ Man page
+.Density Man page
BayesHMM Man page
BayesHMM-package Man page
Bernoulli Man page
Beta Man page
Binomial Man page
Categorical Man page
Cauchy Man page
CholeskyLKJCor Man page
Density Man page
DensityList Man page
Dirichlet Man page
DiscreteDensity Man page
Exponential Man page
GammaDensity Man page
Gaussian Man page
ImproperUniform Man page
InitialFixed Man page
InitialSoftmax Man page
InverseWishart Man page
LinkDensity Man page
MVGaussian Man page
MVGaussianCholeskyCor Man page
MVStudent Man page
Multinomial Man page
MultivariateDensity Man page
MultivariateDiscreteDensity Man page
NegativeBinomial Man page
NegativeBinomialLocation Man page
Optimization Man page
Poisson Man page
PriorOnlyDensity Man page
PriorOnlyMultivariateDensity Man page
RegBernoulliLogit Man page
RegBinomialLogit Man page
RegBinomialProbit Man page
RegCategoricalSoftmax Man page
RegGaussian Man page
Specification Man page
Student Man page
TransitionFixed Man page
TransitionSoftmax Man page
Wishart Man page
block_data Man page
block_data.Density Man page
block_data.DiscreteDensity Man page
block_data.RegBernoulliLogit Man page
block_data.RegBinomialLogit Man page
block_data.RegBinomialProbit Man page
block_data.RegCategoricalSoftmax Man page
block_data.RegGaussian Man page
block_data.Specification Man page
block_functions Man page
block_functions.Specification Man page
block_generated Man page
block_generated.Specification Man page
block_parameters Man page
block_parameters.Specification Man page
block_target Man page
block_target.Specification Man page
block_tdata Man page
block_tdata.Specification Man page
block_tparameters Man page
block_tparameters.Specification Man page
browse_model Man page
browse_model.Optimization Man page
browse_model.Specification Man page
browse_model.stanfit Man page
browse_model.stanmodel Man page
classify_alpha Man page
classify_alpha.Optimization Man page
classify_alpha.stanfit Man page
classify_gamma Man page
classify_gamma.Optimization Man page
classify_gamma.stanfit Man page
classify_quantity Man page
classify_zstar Man page
classify_zstar.Optimization Man page
classify_zstar.stanfit Man page
compile Man page
compile.Specification Man page
constants Man page
constants.Binomial Man page
constants.Categorical Man page
constants.Density Man page
constants.Multinomial Man page
constants.RegBinomialLogit Man page
constants.RegBinomialProbit Man page
constants.RegCategoricalSoftmax Man page
draw_samples Man page
draw_samples.Optimization Man page
draw_samples.Specification Man page
draw_samples.stanfit Man page
draw_samples.stanmodel Man page
explain Man page
explain.Specification Man page
explain_density Man page
explain_density.Density Man page
explain_density.DensityList Man page
explain_density.InitialFixed Man page
explain_density.InitialSoftmax Man page
explain_density.TransitionFixed Man page
explain_density.TransitionSoftmax Man page
explain_initial Man page
explain_initial.Specification Man page
explain_observation Man page
explain_observation.Specification Man page
explain_transition Man page
explain_transition.Specification Man page
extract Man page
extract_K Man page
extract_R Man page
extract_T Man page
extract_alpha Man page
extract_best Man page
extract_data Man page
extract_date Man page
extract_date.Optimization Man page
extract_date.stanfit Man page
extract_diagnostics Man page
extract_diagnostics.stanfit Man page
extract_filename Man page
extract_gamma Man page
extract_grid Man page
extract_grid.Optimization Man page
extract_grid.OptimizationList Man page
extract_model Man page
extract_n_chains Man page
extract_n_chains.stanfit Man page
extract_n_iterations Man page
extract_n_iterations.stanfit Man page
extract_n_thin Man page
extract_n_thin.stanfit Man page
extract_n_warmup Man page
extract_n_warmup.stanfit Man page
extract_obs_parameters Man page
extract_parameter_names Man page
extract_parameter_names.Optimization Man page
extract_parameter_names.stanfit Man page
extract_parameters Man page
extract_quantity Man page
extract_quantity.Optimization Man page
extract_quantity.stanfit Man page
extract_sample_size Man page
extract_sample_size.stanfit Man page
extract_seed Man page
extract_seed.Optimization Man page
extract_seed.stanfit Man page
extract_spec Man page
extract_stanmodel Man page
extract_stanmodel.Optimization Man page
extract_stanmodel.stanfit Man page
extract_stanmodel.stanmodel Man page
extract_time Man page
extract_time.Optimization Man page
extract_time.stanfit Man page
extract_y Man page
extract_ypred Man page
extract_ysim Man page
extract_zpred Man page
extract_zsim Man page
extract_zstar Man page
fit Man page
fit.Optimization Man page
fit.Specification Man page
fit.stanfit Man page
fit.stanmodel Man page
fixedParameters Man page
fixedParameters.Bernoulli Man page
fixedParameters.Beta Man page
fixedParameters.Binomial Man page
fixedParameters.Categorical Man page
fixedParameters.Cauchy Man page
fixedParameters.Dirichlet Man page
fixedParameters.Exponential Man page
fixedParameters.GammaDensity Man page
fixedParameters.Gaussian Man page
fixedParameters.InitialFixed Man page
fixedParameters.InitialSoftmax Man page
fixedParameters.MVGaussian Man page
fixedParameters.MVGaussianCholeskyCor Man page
fixedParameters.MVStudent Man page
fixedParameters.Multinomial Man page
fixedParameters.NegativeBinomial Man page
fixedParameters.NegativeBinomialLocation Man page
fixedParameters.Poisson Man page
fixedParameters.PriorOnlyDensity Man page
fixedParameters.RegBernoulliLogit Man page
fixedParameters.RegBinomialLogit Man page
fixedParameters.RegBinomialProbit Man page
fixedParameters.RegCategoricalSoftmax Man page
fixedParameters.RegGaussian Man page
fixedParameters.Student Man page
fixedParameters.TransitionFixed Man page
fixedParameters.TransitionSoftmax Man page
freeParameters Man page
freeParameters.Bernoulli Man page
freeParameters.Beta Man page
freeParameters.Binomial Man page
freeParameters.Categorical Man page
freeParameters.Cauchy Man page
freeParameters.Dirichlet Man page
freeParameters.Exponential Man page
freeParameters.GammaDensity Man page
freeParameters.Gaussian Man page
freeParameters.InitialFixed Man page
freeParameters.InitialSoftmax Man page
freeParameters.MVGaussian Man page
freeParameters.MVGaussianCholeskyCor Man page
freeParameters.MVStudent Man page
freeParameters.Multinomial Man page
freeParameters.NegativeBinomial Man page
freeParameters.NegativeBinomialLocation Man page
freeParameters.Poisson Man page
freeParameters.PriorOnlyDensity Man page
freeParameters.RegBernoulliLogit Man page
freeParameters.RegBinomialLogit Man page
freeParameters.RegBinomialProbit Man page
freeParameters.RegCategoricalSoftmax Man page
freeParameters.RegGaussian Man page
freeParameters.Student Man page
freeParameters.TransitionFixed Man page
freeParameters.TransitionSoftmax Man page
generated Man page
generated.Bernoulli Man page
generated.Beta Man page
generated.Binomial Man page
generated.Categorical Man page
generated.Cauchy Man page
generated.Dirichlet Man page
generated.Exponential Man page
generated.GammaDensity Man page
generated.Gaussian Man page
generated.MVGaussian Man page
generated.MVGaussianCholeskyCor Man page
generated.MVStudent Man page
generated.Multinomial Man page
generated.NegativeBinomial Man page
generated.NegativeBinomialLocation Man page
generated.Poisson Man page
generated.PriorOnlyDensity Man page
generated.RegBernoulliLogit Man page
generated.RegBinomialLogit Man page
generated.RegBinomialProbit Man page
generated.RegCategoricalSoftmax Man page
generated.RegGaussian Man page
generated.Student Man page
getFixedParameters Man page
getFixedParameters.Density Man page
getFreeParameters Man page
getFreeParameters.Density Man page
getFreeParameters.PriorOnlyDensity Man page
getParameterNames Man page
getParameterNames.Bernoulli Man page
getParameterNames.Beta Man page
getParameterNames.Binomial Man page
getParameterNames.Categorical Man page
getParameterNames.Cauchy Man page
getParameterNames.Density Man page
getParameterNames.Dirichlet Man page
getParameterNames.Exponential Man page
getParameterNames.GammaDensity Man page
getParameterNames.Gaussian Man page
getParameterNames.InitialFixed Man page
getParameterNames.InitialSoftmax Man page
getParameterNames.MVGaussian Man page
getParameterNames.MVGaussianCholeskyCor Man page
getParameterNames.MVStudent Man page
getParameterNames.Multinomial Man page
getParameterNames.NegativeBinomial Man page
getParameterNames.NegativeBinomialLocation Man page
getParameterNames.Poisson Man page
getParameterNames.PriorOnlyDensity Man page
getParameterNames.RegBernoulliLogit Man page
getParameterNames.RegBinomialLogit Man page
getParameterNames.RegBinomialProbit Man page
getParameterNames.RegCategoricalSoftmax Man page
getParameterNames.RegGaussian Man page
getParameterNames.Student Man page
getParameterNames.TransitionFixed Man page
getParameterNames.TransitionSoftmax Man page
get_current_theme Man page
get_default_theme Man page
get_plot_theme Man page
get_print_settings Man page
hmm Man page
is.Density Man page
is.DensityList Man page
is.FixedInitial Man page
is.FixedInitial.Density Man page
is.FixedInitial.InitialFixed Man page
is.FixedInitial.Specification Man page
is.FixedTransition Man page
is.FixedTransition.Density Man page
is.FixedTransition.Specification Man page
is.FixedTransition.TransitionFixed Man page
is.Specification Man page
is.TVInitial Man page
is.TVInitial.Density Man page
is.TVInitial.InitialSoftmax Man page
is.TVInitial.Specification Man page
is.TVTransition Man page
is.TVTransition.Density Man page
is.TVTransition.Specification Man page
is.TVTransition.TransitionSoftmax Man page
is.discrete Man page
is.discrete.Density Man page
is.discrete.DensityList Man page
is.discrete.DiscreteDensity Man page
is.discrete.Specification Man page
is.equal Man page
is.equal.Density Man page
is.link Man page
is.link.Density Man page
is.link.LinkDensity Man page
is.multivariate Man page
is.multivariate.Density Man page
is.multivariate.DensityList Man page
is.multivariate.MultivariateDensity Man page
is.multivariate.Specification Man page
is.ordered Man page
is.ordered.Density Man page
is.stanfit Man page
is.stanoptim Man page
link Man page
link.Density Man page
link.InitialFixed Man page
link.InitialSoftmax Man page
link.TransitionFixed Man page
link.TransitionSoftmax Man page
load_theme Man page
logLike Man page
logLike.Bernoulli Man page
logLike.Beta Man page
logLike.Binomial Man page
logLike.Categorical Man page
logLike.Cauchy Man page
logLike.Dirichlet Man page
logLike.Exponential Man page
logLike.GammaDensity Man page
logLike.Gaussian Man page
logLike.MVGaussian Man page
logLike.MVGaussianCholeskyCor Man page
logLike.MVStudent Man page
logLike.Multinomial Man page
logLike.NegativeBinomial Man page
logLike.NegativeBinomialLocation Man page
logLike.Poisson Man page
logLike.PriorOnlyDensity Man page
logLike.RegBernoulliLogit Man page
logLike.RegBinomialLogit Man page
logLike.RegBinomialProbit Man page
logLike.RegCategoricalSoftmax Man page
logLike.RegGaussian Man page
logLike.Student Man page
make_text_header Man page
make_text_line Man page
make_text_subheader Man page
match_parameter_names Man page
mixture Man page
modify_theme_entry Man page
noLogLike Man page
noLogLike.Density Man page
optimizing Man page
optimizing.Optimization Man page
optimizing.Specification Man page
optimizing.stanfit Man page
optimizing.stanmodel Man page
optimizing_all Man page
optimizing_best Man page
optimizing_run Man page
parameters Man page
plot_ppredictive Man page
plot_ppredictive.stanfit Man page
plot_series Man page
plot_state_probability Man page
posterior_intervals Man page
posterior_mode Man page
print.Density Man page
print.Optimization Man page
print.Specification Man page
print.stanfit Man page
prior Man page
prior.Bernoulli Man page
prior.Beta Man page
prior.Binomial Man page
prior.Categorical Man page
prior.Cauchy Man page
prior.CholeskyLKJCor Man page
prior.Dirichlet Man page
prior.Exponential Man page
prior.GammaDensity Man page
prior.Gaussian Man page
prior.ImproperUniform Man page
prior.InitialFixed Man page
prior.InitialSoftmax Man page
prior.InverseWishart Man page
prior.MVGaussian Man page
prior.MVGaussianCholeskyCor Man page
prior.MVStudent Man page
prior.Multinomial Man page
prior.NegativeBinomial Man page
prior.NegativeBinomialLocation Man page
prior.Poisson Man page
prior.RegBernoulliLogit Man page
prior.RegBinomialLogit Man page
prior.RegBinomialProbit Man page
prior.RegCategoricalSoftmax Man page
prior.RegGaussian Man page
prior.Student Man page
prior.TransitionFixed Man page
prior.TransitionSoftmax Man page
prior.Wishart Man page
run Man page
run.Specification Man page
select_all_parameters Man page
select_initial_parameters Man page
select_obs_parameters Man page
select_parameters Man page
select_transition_parameters Man page
sim Man page
sim.Optimization Man page
sim.Specification Man page
sim.stanfit Man page
sim.stanmodel Man page
specify Man page
string_simplify Man page
theme Man page
validate_calibration Man page
write_chunks Man page
write_chunks.Specification Man page
write_model Man page
write_model.Specification Man page
luisdamiano/BayesHMM documentation built on May 20, 2019, 2:59 p.m.