Files in luisgarreta/ppGS
Parallel pipeline for Genomic Selection
DESCRIPTION
LICENSE
NAMESPACE
R/bwgs_gilles.R
R/cross_validation.R
R/gs_configfile.R
R/gs_datasets.R
R/gs_heritability.R
R/gs_multi.R
R/gs_plots.R
R/gs_plotsHCL.R
R/gs_single.R
R/gs_split.R
R/import_packages.R
R/predict.R
README.md
data-raw/DATASET.R
data-raw/full/full-config.yml
data-raw/full/full-target-geno.csv
data-raw/full/full-target-pheno.csv
data-raw/full/full-training-geno.csv
data-raw/full/full-training-pheno.csv
data-raw/single/single-config.yml
data-raw/single/single-target-geno.csv
data-raw/single/single-target-pheno.csv
data-raw/single/single-training-geno.csv
data-raw/single/single-training-pheno.csv
data-raw/small/small-config.yml
data-raw/small/small-target-geno.csv
data-raw/small/small-target-pheno.csv
data-raw/small/small-training-geno.csv
data-raw/small/small-training-pheno.csv
data-raw/sources/sources-genotypes-CCC-Andigena-ClusterCall2020.csv
data-raw/sources/sources-phenotypes-CCC-Andigena-ColorTraitsHCL.csv
data/.Rhistory
data/fullConfig.rda
data/fullTgGn.rda
data/fullTgPh.rda
data/fullTrGn.rda
data/fullTrPh.rda
data/singleConfig.rda
data/singleTgGn.rda
data/singleTgPh.rda
data/singleTrGn.rda
data/singleTrPh.rda
data/smallConfig.rda
data/smallTgGn.rda
data/smallTgPh.rda
data/smallTrGn.rda
data/smallTrPh.rda
data/sourceGeno.rda
data/sourcePhenos.rda
docs/images/heritability/out-Heritability-HCL-Comparison-PLOT.pdf
docs/images/out-CrossValidation-ModelsTraits-FULL.pdf
docs/images/out-CrossValidation-ModelsTraits-GWAS50.pdf
docs/images/out-CrossValidation-ModelsTraits-RANDOM50.pdf
docs/images/single/out-CrossValidation-kfolds.pdf
docs/images/single/out-CrossValidation-kfolds.pdf-g11142-4294966341.png
docs/images/single/out-CrossValidation-kfolds.pdf-g112-4294966660.png
docs/images/single/out-CrossValidation-kfolds.pdf-g13088-4294967116.png
docs/images/single/out-CrossValidation-kfolds.pdf-g14906-4294966275.png
docs/images/single/out-CrossValidation-kfolds.pdf-g156-4294966962.png
docs/images/single/out-CrossValidation-kfolds.pdf-g16724-4294967056.png
docs/images/single/out-CrossValidation-kfolds.pdf-g18542-4294966770.png
docs/images/single/out-CrossValidation-kfolds.pdf-g1930-4294966953.png
docs/images/single/out-CrossValidation-kfolds.pdf-g20360-4294966919.png
docs/images/single/out-CrossValidation-kfolds.pdf-g22178-4294966467.png
docs/images/single/out-CrossValidation-kfolds.pdf-g24114-4294967136.png
docs/images/single/out-CrossValidation-kfolds.pdf-g25932-4294966573.png
docs/images/single/out-CrossValidation-kfolds.pdf-g27750-4294966998.png
docs/images/single/out-CrossValidation-kfolds.pdf-g29568-4294966653.png
docs/images/single/out-CrossValidation-kfolds.pdf-g31418-4294967291.png
docs/images/single/out-CrossValidation-kfolds.pdf-g33406-4294966349.png
docs/images/single/out-CrossValidation-kfolds.pdf-g35224-4294966745.png
docs/images/single/out-CrossValidation-kfolds.pdf-g37042-4294967202.png
docs/images/single/out-CrossValidation-kfolds.pdf-g3774-4294966799.png
docs/images/single/out-CrossValidation-kfolds.pdf-g38860-4294966497.png
docs/images/single/out-CrossValidation-kfolds.pdf-g40866-4294967095.png
docs/images/single/out-CrossValidation-kfolds.pdf-g42684-4294967286.png
docs/images/single/out-CrossValidation-kfolds.pdf-g44528-4294966594.png
docs/images/single/out-CrossValidation-kfolds.pdf-g46598-4294966759.png
docs/images/single/out-CrossValidation-kfolds.pdf-g48416-4294967017.png
docs/images/single/out-CrossValidation-kfolds.pdf-g50504-4294967107.png
docs/images/single/out-CrossValidation-kfolds.pdf-g5592-4294967023.png
docs/images/single/out-CrossValidation-kfolds.pdf-g7442-4294966939.png
docs/images/single/out-CrossValidation-kfolds.pdf-g9260-4294966707.png
docs/images/single/out-CrossValidation-times.pdf
docs/images/single/out-GEBVs-AllModels-TRAINING.pdf
docs/images/single/out-GEBVs-BestModel-TARGET.pdf
docs/images/single/out-GEBVs-BestModel-TRAINING.pdf
docs/images/single/out-GEBVs-BestModel-TRAINING.pdf-g158-4294967093.png
docs/images/single/out-single-results.pdf
docs/images/single/out-single-results.svg
docs/intro-ppGS.lyx~
docs/introduction_ppGS.lyx
docs/introduction_ppGS.lyx~
docs/introduction_ppGS.pdf
docs/lyx/intro-ppGS.lyx~
docs/scripts/create-packages.R
docs/scripts/gs_testmulti.R
docs/scripts/gs_testsingle.R
docs/tmp.lyx
docs/tmp.pdf
man/bwgs.cv.Rd
man/bwgs.predict.Rd
man/gs_configfile.Rd
man/gs_datasets.Rd
man/gs_heritability.Rd
man/gs_multi.Rd
man/gs_outputs.Rd
man/gs_plotsHCL.Rd
man/gs_single.Rd
man/gs_split.Rd
vignettes/.gitignore
vignettes/intro.pdf
vignettes/introduction.Rnw
