gs_datasets: Write datasets to files

In luisgarreta/ppGS: Parallel pipeline for Genomic Selection

Description

Function that writes into CSV files different types of datasets used for genomica selection (training/target/sources phenotypes and genotypes)

Usage

gs_datasets(type)

Arguments

type

String defining the type of dataset to generate: "small", "full", "sources, or "single". "small" and "full" create both a configuration file (YAML format) and training/target datasets for genomic selection with multiple phentotypes. The former with a genotype of 1000 markers and a phenotype of 6 traits, and the latest with a genotype of 4640 markers and 24 traits. "sources" copies original genotype and phenotype datasets used to generate the "small" and "full" datasets. And "single" creates both a configuration file (YAML format) and training/target datasets for genomic selection with single phenotype.

Value

None. Files are written into directories with the same name of the type arguments (i.e, "small", "full", "sources", and "single")

luisgarreta/ppGS documentation built on Jan. 17, 2022, 9:23 p.m.