Man pages for lujunyan1118/DrugScreenExplorer_dev
A pipeline for processing drug sensitivity screen data
| correctEdgeEffect | Estimate and correct edge effect for each screen plate |
| createPlateInput | Create a template for plate annotation file |
| createWellInput | Create a template for well annotation file |
| estimateEdgeEffect | Estimate edge effect intensity |
| fitEdgeEffect | Fit a 2D surface to capture the incubation/edge effect on... |
| fitIC50 | Use the dr4pl package to perform IC50 curve fitting. Can be... |
| makeReport | Generate a quality report of the screen data |
| makeShiny | Generate a shiny app to explore process data interactively |
| normalizePlate | Per-plate normalization |
| plotPlate | Plot the layout or measurements on each screening plate |
| plotRawCount | Plot the distribution of the raw signal intensity (raw... |
| plotTypeDist | Plotting raw signal distribution for each well type |
| predict.fitIC50 | Predict responses based on input dose information and fitted... |
| readScreen | Read and assemble a drug screen dataset |
| screenData | Example drug screen data on CLL samples |
| screenData_normalized | Example drug screen data on CLL samples with normalization |
| sumIC50 | Summarise drug effect across concentrations using a... |
| summariseScreen | Summarise the drug effect across concentrations |
