makeShiny: Generate a shiny app to explore process data interactively

In lujunyan1118/DrugScreenExplorer_dev: A pipeline for processing drug sensitivity screen data

Description

This function generates a customized shiny app for interactive exploration of the processed and annotated screen data

Usage

makeShiny(screenData, sampleAnnotations = c("sampleID", "patientID"))

Arguments

screenData	a data frame that contains the processed screen data generated by readScreen() function
sampleAnnotations	a vector of character strings, specifying the columns that should be used as sample annotations. The information in those columns can be used to label samples in visualization or to perform association test.

Value

This function creates a folder named 'shiny' in the working direction. In the 'shiny' folder, 'app.R' is the R script for the shiny app and 'shinyData.RData' contains the processed data for the shiny app.

Examples

# load processed data
data(screenData_normalized)

# make html report
makeShiny(screenData_normalized)

lujunyan1118/DrugScreenExplorer_dev documentation built on Dec. 21, 2021, 12:42 p.m.