runGSEA | R Documentation |
A funtion to perform GSEA or PAGE analysis
runGSEA(inputTab, gmtFile, GSAmethod = "gsea", nPerm = 1000)
inputTab |
Ranked gene list for enrichment analysis, gene symbols as rownames and column stat contains the statistics for the ranking. |
gmtFile |
A path to the gene signature file. |
GSAmethod |
Method for enrichment analysis, currently supports GSEA and PAGE |
nPerm |
Number of permutations for GSEA analysis |
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