vignettes/README.md

In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics

Description of files

• demo.Rmd - demonstration of the method and plotting features using a small simulated data set.
• figures2-4-slideseq.Rmd - for reproducing all of the main figures involving the Slide-seqV2 data in this study. See the code and output here.
• suppfigure-CI-sim.Rmd - for reproducing the confidence interval simulations.
• suppfigure-CI-plots.Rmd - code for generating plots from the confidence interval simulations.
• suppfigure-ptgds-scatac-rnaseq.Rmd - for reproducing the Ptgds gene results using scATAC and mouse brain atlas scRNA-seq.
• suppfigure-simulation1.Rmd - for reproducing the ASE spatial transcriptomics simulations.
• suppfigure-simulation1-plots.Rmd - for generating plots from the simulated ASE spatial transcriptomics.

lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.