plot_weights: Spatially plot the confident weights for each cell type
In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics
plot_weights R Documentation
Spatially plot the confident weights for each cell type
Description
Plots the confident weights for each cell type as in full_mode. Saves as 'cell_type_weights.pdf'
Usage
plot_weights(cell_type_names, puck, resultsdir, weights)
Arguments
cell_type_names
list of cell type names
puck
an object of type SpatialRNA
resultsdir
output directory
weights
a dataframe of RCTD output weights (see gather_results)
lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.
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| plot_weights | R Documentation |
Spatially plot the confident weights for each cell type
Description
Plots the confident weights for each cell type as in full_mode. Saves as 'cell_type_weights.pdf'
Usage
plot_weights(cell_type_names, puck, resultsdir, weights)
Arguments
cell_type_names |
list of cell type names |
puck |
an object of type SpatialRNA |
resultsdir |
output directory |
weights |
a dataframe of RCTD output weights (see |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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