quasibinase: Helper function to fit quasibinomial model while handling...
In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics
quasibinase R Documentation
Helper function to fit quasibinomial model while handling common warnings/errors
Description
This function fits a quasibinomial model from the package aod
and wraps it so that warnings and/or errors are output.
Usage
quasibinase(y, total, mod.mat = NULL)
Arguments
y
vector of counts to be modeled
total
vector of total counts
mod.mat
optional model matrix that contains the design matrix of
interest. Used for adding the thin plate regression spline basis functions
in the 'spase' function and for adding cell type as a covariate. Note that
we assume there is an intercept column in mod.mat.
Details
Just wraps glm to return either the fit or warning description. Warnings
and errors occur when the model doesn't converge. These will be flagged for
removing downstream.
Value
A list the result, warnings, and errors
lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.
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| quasibinase | R Documentation |
Helper function to fit quasibinomial model while handling common warnings/errors
Description
This function fits a quasibinomial model from the package aod and wraps it so that warnings and/or errors are output.
Usage
quasibinase(y, total, mod.mat = NULL)
Arguments
y |
vector of counts to be modeled |
total |
vector of total counts |
mod.mat |
optional model matrix that contains the design matrix of interest. Used for adding the thin plate regression spline basis functions in the 'spase' function and for adding cell type as a covariate. Note that we assume there is an intercept column in mod.mat. |
Details
Just wraps glm to return either the fit or warning description. Warnings and errors occur when the model doesn't converge. These will be flagged for removing downstream.
Value
A list the result, warnings, and errors
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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