run.CSIDE.intercept: Runs CSIDE in intercept-only mode
In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics

run.CSIDE.intercept

R Documentation

Runs CSIDE in intercept-only mode

Description

Runs CSIDE in intercept-only mode

Usage

run.CSIDE.intercept(
  myRCTD,
  barcodes = NULL,
  cell_types = NULL,
  cell_type_threshold = 125,
  gene_threshold = 5e-05,
  doublet_mode = T,
  weight_threshold = NULL,
  sigma_gene = T,
  PRECISION.THRESHOLD = 0.05,
  cell_types_present = NULL,
  normalize_expr = F,
  logs = F,
  test_error = F,
  spase = F
)

lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.