analysis/scripts/run_spase_cere3_overall_bias.R
In lulizou/spASE: Detecting Allele-Specific Expression in Spatial Transcriptomics
library(spacexr)
library(spASE)
res <- readRDS('results/rctd_cere_3.rds')
maternal_counts_matrix <- res@originalSpatialRNA@maternalCounts
paternal_counts_matrix <- res@originalSpatialRNA@paternalCounts
myfit <- scase(
maternal_counts_matrix,
paternal_counts_matrix,
min.cells = 2^7, cores=8, verbose=F
)
saveRDS(myfit, 'results/results_overall_bias_cere_3.rds')
lulizou/spASE documentation built on May 22, 2024, 5:24 a.m.
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library(spacexr)
library(spASE)
res <- readRDS('results/rctd_cere_3.rds')
maternal_counts_matrix <- res@originalSpatialRNA@maternalCounts
paternal_counts_matrix <- res@originalSpatialRNA@paternalCounts
myfit <- scase(
maternal_counts_matrix,
paternal_counts_matrix,
min.cells = 2^7, cores=8, verbose=F
)
saveRDS(myfit, 'results/results_overall_bias_cere_3.rds')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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