ModSOM: Preparation of data for multiSOMe analysis

In lydiahopp/multiSOMe: Integration of multiple OME data sets using SOMs

Description

Preparation of data for multiSOMe analysis

Usage

ModSOM(indata.exp, indata.meth, group.labels, modpar)

Arguments

indata.exp	gene expression matrix, Should have the same colnames as indata.meth, suffix "exp" will be added automatically
indata.meth	DNA methylation matrix, Should have the same colnames as indata.exp
modpar	see manual of modpar function
w	weight of e=gene expression and DNA methylation data, if w=0 SOM will be trained according to DNA methylation data, if w=1 SOM will be trained according to gene expression data

Value

modified matrix for input, harmonization weights for expression and methylation (to make the comparable)

lydiahopp/multiSOMe documentation built on Oct. 13, 2019, 2:06 p.m.