Jahn_CellReports_2018: Data from the publication of Jahn et al., CellReports, 2018

In m-jahn/WeightedTreemaps: Generate and Plot Voronoi or Sunburst Treemaps from Hierarchical Data

Data from the publication of Jahn et al., CellReports, 2018

Description

The dataset contains protein abundances of the Synechocystis sp. PCC6803 proteome. Protein abundance was determined using shotgun mass spectrometry. The data set also contains pathway information according to the cyanobase hierarchical annotation:

Usage

data(Jahn_CellReports_2018)

Format

A data frame with 19790 rows and 12 variables

Details

• protein - protein ID

• condition - combination from light and CO2

• light - light intensity in umol photons / m2 * s

• co2_concentration - CO2 concentration in

• mean_intensity - mean MS1 ion intensity

• mean_mass_fraction_norm - normalized mean mass fraction of protein

• sd_intensity - standard deviation from mean

• Process - functional annotation 1st level

• Pathway - functional annotation 2nd level

• Protein - functional annotation 3rd level

• Process.abbr - abbreviated Process

• Pathway.abbr - abbreviated Pathway

• Gene.names - trivial names of genes, if available

Source

https://pubmed.ncbi.nlm.nih.gov/30304686/

m-jahn/WeightedTreemaps documentation built on Dec. 15, 2024, 10:09 a.m.