Files in m-swirski/RiboCrypt
Interactive visualization in genomics
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/3dbeacons_utils.R
R/DEG.R
R/Gene_subsetting.R
R/Loaders.R
R/Module_controllers.R
R/Protein_structures.R
R/Reactive_controllers.R
R/Reactive_data.R
R/Reactive_getters.R
R/RiboCrypt_app.R
R/Select_panels_init.R
R/Select_panels_update.R
R/Shiny_Observed_Events.R
R/URL_helpers.R
R/all_samples_browser_internal.R
R/all_samples_browser_metadata.R
R/annotation_plots.R
R/argument_control_functions.R
R/boxplot.R
R/browser_ORFikExp.R
R/browser_default.R
R/browser_helpers.R
R/collection_helpers.R
R/init_event_checkers.R
R/js_helpers.R
R/metaplots.R
R/multiOmicsPlot_internal.R
R/multi_lib_metacoverage.R
R/other_helpers.R
R/page_DEG.R
R/page_analysis.R
R/page_browser.R
R/page_browser_all_samples.R
R/page_codon.R
R/page_fastq.R
R/page_heatmap.R
R/page_metadata.R
R/page_predicted_translons.R
R/page_qc.R
R/page_sra_search.R
R/page_study_info.R
R/page_tutorial.R
R/plotly_helpers.R
R/plots.R
R/plots_helpers.R
R/profile_getters.R
R/qc_helpers.R
R/quality_plots.R
R/rc_app_header_theme.R
R/rc_app_parameters.R
R/vector_presets.R
README.md
inst/TODO
inst/google_analytics_html/google_analytics.html
inst/images/App_picture_for_overview_vignette.png
inst/images/App_picture_for_readme.png
inst/images/ISC1.png
inst/images/favicon.ico
inst/images/favicon.png
inst/images/favicon1.png
inst/images/logo.png
inst/images/logo.tiff
inst/images/logo_traces.svg
inst/images/logo_traces_update.png
inst/images/logo_traces_update.svg
inst/images/logo_traces_update_with_slogan.png
inst/images/logo_traces_update_with_slogan.svg
inst/images/tutorial_browser_browser.png
inst/images/tutorial_heatmap_browser.png
inst/js/render_on_zoom.js
inst/js/select_region_on_click.js
inst/js/sequence_viewer_coloring.js
inst/rmd/tutorial.html
inst/rmd/tutorial.rmd
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap-theme.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap.css.map
inst/rmd/tutorial_files/bootstrap-3.3.5/css/bootstrap.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/cerulean.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/cosmo.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/darkly.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/flatly.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/Lato.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/css/journal.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/lumen.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/paper.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/readable.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/sandstone.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/simplex.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/spacelab.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/united.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/css/yeti.min.css
inst/rmd/tutorial_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
inst/rmd/tutorial_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
inst/rmd/tutorial_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
inst/rmd/tutorial_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
inst/rmd/tutorial_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
inst/rmd/tutorial_files/bootstrap-3.3.5/js/bootstrap.js
inst/rmd/tutorial_files/bootstrap-3.3.5/js/bootstrap.min.js
inst/rmd/tutorial_files/bootstrap-3.3.5/js/npm.js
inst/rmd/tutorial_files/bootstrap-3.3.5/shim/html5shiv.min.js
inst/rmd/tutorial_files/bootstrap-3.3.5/shim/respond.min.js
inst/rmd/tutorial_files/header-attrs-2.20/header-attrs.js
inst/rmd/tutorial_files/header-attrs-2.21/header-attrs.js
inst/rmd/tutorial_files/header-attrs-2.25/header-attrs.js
inst/rmd/tutorial_files/header-attrs-2.26/header-attrs.js
inst/rmd/tutorial_files/highlightjs-9.12.0/default.css
inst/rmd/tutorial_files/highlightjs-9.12.0/highlight.js
inst/rmd/tutorial_files/highlightjs-9.12.0/textmate.css
inst/rmd/tutorial_files/jquery-3.6.0/jquery-3.6.0.js
inst/rmd/tutorial_files/jquery-3.6.0/jquery-3.6.0.min.js
inst/rmd/tutorial_files/jquery-3.6.0/jquery-3.6.0.min.map
inst/rmd/tutorial_files/navigation-1.1/codefolding-lua.css
inst/rmd/tutorial_files/navigation-1.1/codefolding.js
inst/rmd/tutorial_files/navigation-1.1/sourceembed.js
inst/rmd/tutorial_files/navigation-1.1/tabsets.js
man/DEG_plot.Rd
man/RiboCrypt_app.Rd
man/antisense.Rd
man/browseRC.Rd
man/collection_dir_from_exp.Rd
man/collection_path_from_exp.Rd
man/collection_to_wide.Rd
man/compute_collection_table.Rd
man/createSeqPanelPattern.Rd
man/distanceToFollowing.Rd
man/fetch_JS_seq.Rd
man/fetch_summary.Rd
man/geneTrackLayer.Rd
man/getCoverageProfile.Rd
man/getIndexes.Rd
man/get_meta_browser_plot_full.Rd
man/ggplotlyHover.Rd
man/load_collection.Rd
man/matchMultiplePatterns.Rd
man/matchToGRanges.Rd
man/multiOmicsPlot_ORFikExp.Rd
man/multiOmicsPlot_animate.Rd
man/multiOmicsPlot_list.Rd
man/normalize_collection.Rd
man/organism_input_select.Rd
man/trimOverlaps.Rd
vignettes/RiboCrypt_app_tutorial.rmd
vignettes/RiboCrypt_overview.rmd
