View source: R/RiboCrypt_app.R
RiboCrypt_app | R Documentation |
Create RiboCrypt app
RiboCrypt_app(
validate.experiments = TRUE,
options = list(launch.browser = ifelse(interactive(), TRUE, FALSE)),
all_exp = list.experiments(validate = validate.experiments),
browser_options = c(),
init_tab_focus = "browser",
metadata = NULL,
all_exp_meta = all_exp[grep("all_samples-", name), ]
)
validate.experiments |
logical, default TRUE, set to FALSE to allow starting the app with malformed experiments, be careful will crash if you try to load that experiment! |
options |
list of arguments, default
|
all_exp |
a data.table, default:
|
browser_options |
named character vector of browser specific arguments: |
init_tab_focus |
character, default "browser". Which tab to open on init. |
metadata |
a path to csv or a data.table of metadata columns, must contain a "Run" column to merge IDs to ORFik experiments. Is used in metabrowser for grouping of samples. |
all_exp_meta |
the subset of all_exp which are collections (the set of all experiments per organism), this will be fed to the metabrowser, while remaining all_exp are used in all other modules. |
RiboCrypt shiny app
## Default run
# RiboCrypt_app()
## Plot on start
# RiboCrypt_app(browser_options = c(plot_on_start = "TRUE"))
## Init with an experiment and gene (you must of course have the experiment)
#RiboCrypt_app(validate.experiments = FALSE,
# browser_options = c(plot_on_start = "TRUE",
# default_experiment = "human_all_merged_l50",
# default_gene = "ATF4-ENSG00000128272"))
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