browseRC: Browse a gene on Ribocrypt webpage
In m-swirski/RiboCrypt: Interactive visualization in genomics

browseRC

R Documentation

Browse a gene on Ribocrypt webpage

Description

Can also disply local RiboCrypt app

Usage

browseRC(
  symbol = NULL,
  gene_id = NULL,
  tx_id = NULL,
  exp = "all_merged-Homo_sapiens_modalities",
  libraries = NULL,
  host = "https://ribocrypt.org",
  plot_on_start = TRUE,
  frames_type = "columns",
  kmer = 1,
  browser = getOption("browser")
)

Arguments

`symbol`	gene symbol, default NULL
`gene_id`	gene symbol, default NULL
`tx_id`	gene symbol, default NULL
`exp`	experiment name, default "all_merged-Homo_sapiens_modalities"
`libraries`	NULL, default to first in experiment, c("RFP","RNA") would add RNA to default.
`host`	url, default "https://ribocrypt.org". Set to localhost for local version.
`plot_on_start`	logical, default TRUE. Plot gene when opening browser.
`frames_type`	"columns"
`kmer`	default 1 (kmer window to smear out reads)
`browser`	getOption("browser")