browseRC: Browse a gene on Ribocrypt webpage

In m-swirski/RiboCrypt: Interactive visualization in genomics

Browse a gene on Ribocrypt webpage

Description

Can also disply local RiboCrypt app

Usage

browseRC(
  symbol = NULL,
  gene_id = NULL,
  tx_id = NULL,
  exp = "all_merged-Homo_sapiens_modalities",
  libraries = NULL,
  host = "https://ribocrypt.org",
  plot_on_start = TRUE,
  frames_type = "columns",
  kmer = 1,
  browser = getOption("browser")
)

Arguments

symbol	gene symbol, default NULL
gene_id	gene symbol, default NULL
tx_id	gene symbol, default NULL
exp	experiment name, default "all_merged-Homo_sapiens_modalities"
libraries	NULL, default to first in experiment, c("RFP","RNA") would add RNA to default.
host	url, default "https://ribocrypt.org". Set to localhost for local version.
plot_on_start	logical, default TRUE. Plot gene when opening browser.
frames_type	"columns"
kmer	default 1 (kmer window to smear out reads)
browser	getOption("browser")

Value

browseURL, opens browse with page

m-swirski/RiboCrypt documentation built on July 7, 2024, 9:53 p.m.