Files in macartan/gbiqq
Make, Update, and Query Binary Causal Models

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DESCRIPTION
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NAMESPACE
NEWS.md R/CausalQueries-package.R R/RcppExports.R R/clean_params.R R/data.R R/data_helpers.R R/draw_causal_type.R R/get_ambiguities_matrix.R R/get_causal_types.R R/get_event_prob.R R/get_nodal_types.R R/get_parents.R R/get_posterior_distribution.R R/get_query_types.R R/get_type_helpers.R R/get_type_prob.R R/grab.R R/helpers.R R/internal_inherit_params.R R/make_data.R R/make_events.R R/make_models.R R/make_par_values.R R/map_query_to_causal_type.R R/map_query_to_nodal_type.R R/methods.R R/misc.R R/parmap.R R/plot_dag.R R/prep_stan_data.R R/query_helpers.R R/query_model.R R/realise_outcomes.R R/set_confounds.R R/set_parameter_matrix.R R/set_parameters.R R/set_prior_distribution.R R/set_priors.R R/set_restrictions.R R/stanmodels.R R/update_model.R R/zzz.R README.md
_pkgdown.yml
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docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CausalQueries-package.html
docs/reference/CausalQueries_internal_inherit_params.html
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docs/reference/add_dots.html
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docs/reference/causal_type_names.html
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docs/reference/get_data_families.html
docs/reference/get_estimands.html
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docs/reference/n_check.html
docs/reference/nodes_in_statement.html
docs/reference/non_decreasing.html
docs/reference/non_increasing.html
docs/reference/observe_data.html
docs/reference/parameter_setting.html
docs/reference/parents_to_int.html
docs/reference/perm.html
docs/reference/plot_dag.html
docs/reference/plot_model.html
docs/reference/prep_stan_data.html
docs/reference/print.causal_model.html
docs/reference/print.causal_types.html
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docs/reference/queries_to_types.html
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docs/reference/query_to_expression.html
docs/reference/realise_outcomes.html
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docs/reference/simulate_data.html
docs/reference/st_within.html
docs/reference/substitutes.html
docs/reference/summarise_distribution.html
docs/reference/summary.causal_model.html
docs/reference/te.html
docs/reference/type_matrix.html
docs/reference/uncollapse_nodal_types.html
docs/reference/unpack_wildcard.html
docs/reference/update_causal_types.html
docs/reference/update_model.html
docs/search.json
docs/sitemap.xml
inst/include/stan_meta_header.hpp
inst/stan/CONTRIBUTING.md
inst/stan/include/license.stan
inst/stan/simplexes.stan
man/CausalQueries-package.Rd man/CausalQueries_internal_inherit_params.Rd man/add_dots.Rd man/add_wildcard.Rd man/causal_type_names.Rd man/check_args.Rd man/check_query.Rd man/check_string_input.Rd man/clean_condition.Rd man/clean_param_vector.Rd man/clean_params.Rd man/collapse_data.Rd man/collapse_nodal_types.Rd man/complements.Rd man/construct_commands_alter_at.Rd man/construct_commands_other_args.Rd man/construct_commands_param_names.Rd man/data_to_data.Rd man/data_type_names.Rd man/decreasing.Rd man/default_stan_control.Rd man/democracy_data.Rd man/draw_causal_type.Rd man/drop_empty_families.Rd man/expand_data.Rd man/expand_nodal_expression.Rd man/expand_wildcard.Rd man/find_rounding_threshold.Rd man/get_all_data_types.Rd man/get_ambiguities_matrix.Rd man/get_causal_types.Rd man/get_data_families.Rd man/get_estimands.Rd man/get_event_probabilities.Rd man/get_nodal_types.Rd man/get_param_dist.Rd man/get_parameter_matrix.Rd man/get_parameter_names.Rd man/get_parents.Rd man/get_parmap.Rd man/get_posterior_distribution.Rd man/get_prior_distribution.Rd man/get_query_types.Rd man/get_type_distributions.Rd man/get_type_names.Rd man/get_type_prob.Rd man/get_type_prob_c.Rd man/get_type_prob_multiple.Rd man/get_type_prob_multiple_c.Rd man/grab.Rd man/gsub_many.Rd man/increasing.Rd man/institutions_data.Rd man/interacts.Rd man/interpret_type.Rd man/is_a_model.Rd man/lipids_data.Rd man/list_non_parents.Rd man/make_ambiguities_matrix.Rd man/make_data.Rd man/make_data_single.Rd man/make_events.Rd man/make_model.Rd man/make_nodal_types.Rd man/make_par_values.Rd man/make_par_values_stops.Rd man/make_parameter_matrix.Rd man/make_parameters_df.Rd man/make_parmap.Rd man/make_prior_distribution.Rd man/minimal_data.Rd man/minimal_event_data.Rd man/n_check.Rd man/nodes_in_statement.Rd man/non_decreasing.Rd man/non_increasing.Rd man/observe_data.Rd man/parameter_setting.Rd man/parents_to_int.Rd man/perm.Rd man/plot_model.Rd man/prep_stan_data.Rd man/print.causal_model.Rd man/print.causal_types.Rd man/print.dag.Rd man/print.event_probabilities.Rd man/print.model_query.Rd man/print.nodal_types.Rd man/print.nodes.Rd man/print.parameter_mapping.Rd man/print.parameters.Rd man/print.parameters_df.Rd man/print.parameters_posterior.Rd man/print.parameters_prior.Rd man/print.parents_df.Rd man/print.posterior_event_probabilities.Rd man/print.stan_summary.Rd man/print.statement.Rd man/print.type_distribution.Rd man/print.type_prior.Rd man/prior_setting.Rd man/queries_to_types.Rd man/query_distribution.Rd man/query_model.Rd man/query_to_expression.Rd man/realise_outcomes.Rd man/restrict_by_labels.Rd man/restrict_by_query.Rd man/reveal_outcomes.Rd man/set_ambiguities_matrix.Rd man/set_confound.Rd man/set_parameter_matrix.Rd man/set_parmap.Rd man/set_prior_distribution.Rd man/set_restrictions.Rd man/set_sampling_args.Rd man/simulate_data.Rd man/st_within.Rd man/substitutes.Rd man/summarise_distribution.Rd man/summary.causal_model.Rd man/te.Rd man/type_matrix.Rd man/uncollapse_nodal_types.Rd man/unpack_wildcard.Rd man/update_causal_types.Rd man/update_model.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/get_type_prob_helpers_arma.cpp
src/realise_outcome_c.cpp
src/stanExports_simplexes.cc
src/stanExports_simplexes.h
tests/testthat.R tests/testthat/test_clean_params.R tests/testthat/test_data_helpers.R tests/testthat/test_data_strategy.R tests/testthat/test_draw_causal_type.R tests/testthat/test_get_ambiguity_matrix.R tests/testthat/test_get_causal_types.R tests/testthat/test_get_event_prob.R tests/testthat/test_get_nodal_types.R tests/testthat/test_get_posterior_distribution.R tests/testthat/test_get_query_types.R tests/testthat/test_get_type_prob.R tests/testthat/test_get_types.R tests/testthat/test_grab.R tests/testthat/test_helpers.R tests/testthat/test_layering.R tests/testthat/test_lookuptype.R tests/testthat/test_make_confounders.R tests/testthat/test_make_data.R tests/testthat/test_make_events.R tests/testthat/test_make_model.R tests/testthat/test_make_par_values.R tests/testthat/test_map_query_to_causal_types.R tests/testthat/test_map_query_to_nodal_type.R tests/testthat/test_methods.R tests/testthat/test_misc.R tests/testthat/test_observe.R tests/testthat/test_parmap.R tests/testthat/test_plot_dag.R tests/testthat/test_prep_stan_data.R tests/testthat/test_query_helpers.R tests/testthat/test_query_model.R tests/testthat/test_restrictions.R tests/testthat/test_reveal_outcomes.R tests/testthat/test_set_confound.R tests/testthat/test_set_parameter_matrix.R tests/testthat/test_set_parameters.R tests/testthat/test_set_prior_distribution.R tests/testthat/test_set_priors.R tests/testthat/test_set_restrictions.R tests/testthat/test_type_helpers.R tests/testthat/test_update_model.R
tests/testthat/testthat-problems.rds
vignettes/.gitignore
vignettes/front-door.Rmd vignettes/getting-started.Rmd vignettes/inspecting-posteriors.Rmd
macartan/gbiqq documentation built on April 23, 2024, 10:26 p.m.