SameScale.scatter: Interactive scatterplot comparing FC between different...
In machalen/InteractiveGraphs: Make interactive scatterplots in R

Description Usage Arguments Details Value Author(s)

This function allows to plot values of FC using a cut-off in order to see which genes are positive correlated, negative correlated or inverse correlated.

1	SameScale.scatter(num_mat1, num_mat2, col1.cutoff, col2.cutoff, FC.Col1, FC.Col2, cutoff, mainName, filePath = NULL, PNG = TRUE)

`num_mat1`	First data matrix to compare with rownames = GeneID and values of FC and p.Val
`num_mat2`	Second data matrix to compare with rownames = GeneID and values of FC and p.Val
`col1.cutoff`	Column name in the first matrix used to apply the cut-off
`col2.cutoff`	Column name in the second matrix used to apply the cut-off
`FC.Col1`	Column name in the first matrix containing the values of FC
`FC.Col2`	Column name in the second matrix containing the values of FC
`cutoff`	Cut-off used to plot the genes
`mainName`	Name of the output
`filePath`	File path for the results. Used only if PNG=TRUE
`PNG`	If PNG=TRUE a .png file is created

This function is used to compare two results with different FC and p-value scores. It uses a cut-off parameter and plots the intersection of the genes in both matrices using the FC values (X and Y axis). In the interactive version the name of each data point can also be accessed. The package plotly is required in order to make the interctive graphs.

A interactive version of the plot is shown in Rstudio. When PNG=TRUE the static plot is created in the filePath.

Magdalena Arnal Segura <marnal@imim.es>

machalen/InteractiveGraphs documentation built on May 23, 2019, 7:18 a.m.