README.md

In machalen/QualityGraphs: Make quality graphs for microarray data based on objects obtained witharoma affymetrix normalization.

Quality Graphs for aroma affymetrix based normalization in microarray data.

This package contains functions to perform the quality control analysis for microarray data

• densityplot_all : Plot with log2 raw intensities in density plots.
• boxplot_all : Plot with log2 raw intensities in boxplots.
• clusterdend : Plot dendrograms with methods: ward.D2, average and complete and distances: Correlations and euclidean
• makePCA : 3D plot with a principal component analysis (PCA)
• qualityplots : A shortcut to call all the previous plots.
• Heat.make : Function to make heatmaps from a numeric matrix.
• MakeVolcano : Function to make heatmaps from a numeric matrix.

machalen/QualityGraphs documentation built on Oct. 22, 2019, 8:29 p.m.