Make quality graphs for microarray data based on objects obtained witharoma affymetrix normalization.

boxplot_all | BoxPlots for quality control |

boxplot_norm | Boxplot for normalized data |

boxplot_raw | Boxplots for raw data in log2 scale |

clusterdend | Clusters for normalized microarray data |

densityplot | Function to make density plots |

densityplot_all | Density plots for microarrays |

Heat.make | Make heatmaps from a numeric matrix. |

makePCA | 3D Plot with Principal Component Analysis (PCA) |

MakeVolcano | Make volcano plots from the results of DE expression |

many.clusters_V | Make dendrogram with different clustering techniques |

QualityGraphs-package | Make quality graphs for microarray data based on objects... |

qualityplots | Make different plots for microarray quality assessment. |

RLE_NUSE | Make relative log expression values (RLE) and normalized... |

setparam | Set parameters to make plots. |

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