Man pages for machalen/QualityGraphs
Make quality graphs for microarray data based on objects obtained witharoma affymetrix normalization.
| boxplot_all | BoxPlots for quality control |
| boxplot_norm | Boxplot for normalized data |
| boxplot_raw | Boxplots for raw data in log2 scale |
| clusterdend | Clusters for normalized microarray data |
| densityplot | Function to make density plots |
| densityplot_all | Density plots for microarrays |
| Heat.make | Make heatmaps from a numeric matrix. |
| makePCA | 3D Plot with Principal Component Analysis (PCA) |
| MakeVolcano | Make volcano plots from the results of DE expression |
| many.clusters_V | Make dendrogram with different clustering techniques |
| QualityGraphs-package | Make quality graphs for microarray data based on objects... |
| qualityplots | Make different plots for microarray quality assessment. |
| RLE_NUSE | Make relative log expression values (RLE) and normalized... |
| setparam | Set parameters to make plots. |
