Venn4Plot.st: Venn diagrams for three tables of genes.

In machalen/VennPlots: Package to make Venn diagrams and genes corresponding to each region of the plot.

Description

Function to make Venn diagrams from three vectors containing gene symbols or gene ids. Results are shown in a plot, and the lists of genes corresponding to each region can be obtained.

Usage

Venn4Plot.st(list1, list2, list3, list4, listNames, filename, img.fmt = "pdf", Table1, Table2, Table3, Table4, ColName = "GeneSymbol", resDir = NULL)

Arguments

list1	First vector of genes to compare in the Venn diagram.
list2	Second vector of genes to compare in the Venn diagram.
list3	Third vector of genes to compare in the Venn diagram.
list4	Fourth vector of genes to compare in the Venn diagram.
listNames	Vector with the names of list1,list2,list3 and list4.
filename	Name of the output files.
img.fmt	Default "pdf", if "png" the Venn plot is generated in .png image format.
Table1	Table with gene information in list1.
Table2	Table with gene information in list2.
Table3	Table with gene information in list3.
Table4	Table with gene information in list4.
ColName	Name of the column containing gene symbols and common in Table1, Table2, Table3 and Table4.
resDir	Results directory path.

Details

Function to make venn diagrams with the comparisons of three vectors and to make a .xlsx file with the common genes. Each sheet contains common genes selected in different tables.

Value

Venn diagram plot in .pdf format and a .xlsx file with common genes.

Author(s)

Magdalena Arnal Segura <[e-mail]>

machalen/VennPlots documentation built on Sept. 13, 2020, 3:53 p.m.