Description Usage Arguments Author(s) References See Also Examples
Perform compositional analyses of adults at Lower Granite Dam.
1 2 3 4 |
adultData |
the .csv file containing the biological data for the adults to be analyzed. The file should contain data for all fish trapped in
a given spawn year and for a given species. The function |
windowData |
the .csv file containing the window count data for the adults to be analyzed. |
Run |
synopsis of the run being conducted. |
RTYPE |
which rear type (wild [W], hatchery [H], or hatchery unclipped [HNC]) would you like to perform the current analysis on |
Primary |
the primary category in the |
Secondary |
the secondary category in the |
SizeCut |
if |
alph |
the alpha used for confidence intervals (e.g., |
B |
the number of bootstraps to be performed |
writeThetas |
would you like to write the thetas to a .csv? These are the |
writeOutput |
would you like to write output files? |
pbtExpand |
should only be used is |
pbtRates |
if |
Kirk Steinhorst and Mike Ackerman
Steinhorst, K., T. Copeland, M. W. Ackerman, W. C. Schrader, E. C. Anderson (In review) Estimates and Confidence Intervals for Run Composition of Returning Salmonids. Fishery Bulletin.
1 2 3 4 5 | SCOBI(adultData = sthdScobiInput, windowData = sthdWindowCounts, Run = "sthdDemo",
RTYPE = "W", Primary = "GenStock", Secondary = "GenSex", alph = 0.1, B = 100)
SCOBI(adultData = pbtTestFish, windowData = sthdWindowCounts, Run = "sthdPbtDemo",
RTYPE = "H", Primary = "PbtStock", Secondary = NA, alph = 0.1, B = 100)
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