getOpalTable: Get a Opal table as a tibble

In maelstrom-research/harmor: Dataset Harmonization Utils

Description

Shortcut function to assign a Opal table to a tibble in the R server-side session and then retrieve it into the R client-side session. Requires to have the permission to see the individual values of the table and to perform R assignments.

Usage

getOpalTable(opal, project, table, variables = NULL, missings = TRUE)

Arguments

opal	Opal connection object.
project	Project name where the table is located.
table	Table name from which the tibble should be extracted.
variables	List of variable names or Javascript expression that selects the variables of a table (ignored if value does not refere to a table). See javascript documentation: http://wiki.obiba.org/display/OPALDOC/Variable+Methods
missings	Include the missing values (default is TRUE).

maelstrom-research/harmor documentation built on Dec. 6, 2019, 7:31 p.m.