makeHarmonizationBook: Make a R markdown book

In maelstrom-research/harmor: Dataset Harmonization Utils

Description

Get the variables from a Opal table and dump a book of R markdown templates, ready for the including derivation code chunks and harmonization status.

Usage

makeHarmonizationBook(
  opal,
  project,
  table,
  taxonomy = "Mlstr_area",
  vocabularies = NULL,
  locale = "en",
  outDir = file.path(getwd(), "_harmobook"),
  outFiles = list(domains = "04-domains.Rmd", index = "06-index.Rmd")
)

Arguments

opal	Opal connection object.
project	Project name where the table is located.
table	Table name from which the data dictionary should be extracted.
taxonomy	Taxonomy name to group variables by vocabularies and terms.
vocabularies	Vocabularies that shall be included, default is all (NULL value).
locale	The locale in which the labels should be extracted (default is "en").
outDir	Output folder where the R markdown files will be produced (default is '_harmobook' folder in the current working directory). Also used to find R markdown templates (in the '_templates' subfolder); if non is found the 'harmor' package default ones will be used.
outFiles	Names of the output files, idenitified by "domains" or "index".

maelstrom-research/harmor documentation built on Dec. 6, 2019, 7:31 p.m.