API for magnusnosnes/LineageHomology
Transmission Lineages From Maximum Likelihood Mappings
| Global functions | |
|---|---|
| EXPM | Man page Source code |
| FitTransition10x | Man page Source code |
| FitTransitionFreeX | Man page Source code |
| LineageHomology | Man page Source code |
| LineageHomology_v2 | Man page Source code |
| LineageHomology_w_uncertainty | Man page Source code |
| LineageHomology_w_uncertainty_v2 | Man page Source code |
| Summarize_import_export_local_transmission | Man page Source code |
| Summarize_import_local_transmission | Man page Source code |
| assign_date_unobserved_TLs | Source code |
| axisPhyloDate | Man page Source code |
| descendants | Source code |
| find_exports_from_nodes | Source code |
| find_midedge_ancestral | Man page Source code |
| find_observed_TLs | Source code |
| find_remaining_nodes_tl | Source code |
| find_unassigned_nodes | Source code |
| find_unobserved_TLs | Source code |
| getAncestors | Man page Source code |
| import_export_local_transmission | Man page Source code |
| import_local_transmission | Man page Source code |
| lineage_growth_cumulative | Man page Source code |
| lineage_info | Man page Source code |
| makeQ | Man page Source code |
| makeQ10X | Man page Source code |
| makeQfreeX | Man page Source code |
| nodeHeights | Man page Source code |
| nodeheight | Man page Source code |
| nodepath_quick | Man page Source code |
| nodepath_quick_w_mrca | Man page Source code |
| nodepath_quick_w_mrca_nodenumber | Man page Source code |
| plot_import_export_local_transmission | Man page Source code |
| plot_importation_local_transmission | Man page Source code |
| reorder_LH | Man page Source code |
| ridgeplot_lineagedensities | Man page Source code |
| statdist | Source code |
| to.matrix | Man page Source code |
| treemap_TLs | Man page Source code |
| treemap_lineagehomology | Man page Source code |
