treemap_lineagehomology: treemap_lineagehomology

In magnusnosnes/LineageHomology: Transmission Lineages From Maximum Likelihood Mappings

treemap_lineagehomology

Description

Treemap_lineagehomology uses the treemap package to visualize transmission lineages (TL) as rectangles with areas that reflect their relative sizes. Additionally, the text on each square gives the group number of the TL, the estimated time of the most recent common ancestor (TMRCA) and the number of tips (S) in the TL. See the full tutorial at https://github.com/magnusnosnes/LineageHomology/blob/master/Examples_and_plotting_methods/Simple_example/Basic_plotting.md

Usage

treemap_lineagehomology(Result_LineageHomology)

Arguments

Result_LineageHomology

Result from the function LineageHomology

magnusnosnes/LineageHomology documentation built on April 17, 2025, 6:30 p.m.