Summarize_import_local_transmission: Summarize_import_local_transmission
In magnusnosnes/LineageHomology: Transmission Lineages From Maximum Likelihood Mappings
View source: R/Import_local_transmission.R
Summarize_import_local_transmission R Documentation
Summarize_import_local_transmission
Description
This function summarizes the estimates of importation and local transmission events from
replicated runs of LineageHomology (e.g. by using LineageHomoolog_w_uncertainty_v2).
Usage
Summarize_import_local_transmission(LineageHomology_replicates)
Arguments
LineageHomology_replicates
Results from running LineageHomology_w_uncertainty_v2
Value
The function returns quantiles of the 2.5, 50, and 97.5 percent quantiles of the observed number of importations and local transmissions in the replicated runs.
magnusnosnes/LineageHomology documentation built on April 17, 2025, 6:30 p.m.
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View source: R/Import_local_transmission.R
| Summarize_import_local_transmission | R Documentation |
Summarize_import_local_transmission
Description
This function summarizes the estimates of importation and local transmission events from replicated runs of LineageHomology (e.g. by using LineageHomoolog_w_uncertainty_v2).
Usage
Summarize_import_local_transmission(LineageHomology_replicates)
Arguments
LineageHomology_replicates |
Results from running LineageHomology_w_uncertainty_v2 |
Value
The function returns quantiles of the 2.5, 50, and 97.5 percent quantiles of the observed number of importations and local transmissions in the replicated runs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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