LOD: Compute the LOD score of a marker given a data set

In mahendra-mariadassou/L1fdvGenetics: Companion self-learning R package to the Genetics Project of FDV bachelor

Description

Compute the LOD score of a marker given a data set

Usage

LOD(marker, data, phenotype = "IgG1")

Arguments

marker	Marker name (e.g. "Marker_1", "Marker_2", should be a column of data).
data	Data frame with genotypes and phenotype. Genotypes should be coded 0/1
phenotype	Phenotype name (defaults to "IgG1"), should be a column of data).

Value

The LOD score (numeric value)

Examples

data(hw_data)
LOD('Marker_1', data = hw_data)

mahendra-mariadassou/L1fdvGenetics documentation built on May 20, 2021, 10:42 p.m.