reconstruction: Reconstruct allele based on flanking markers
In mahendra-mariadassou/L1fdvGenetics: Companion self-learning R package to the Genetics Project of FDV bachelor
Description
Usage
Arguments
Value
Examples
Description
Reconstruct allele based on flanking markers
Usage
1
reconstruction(la, ra, ld, rd)
Arguments
la
Allele (0/1) at left flanking marker
ra
Allele (0/1) at right flanking marker
ld
Distance (in Morgans) to left flanking marker
rd
Distance (in Morgans) to right flanking marker
Value
Probability of allele 0 at given position
Examples
1
2
3
4
## close to marker with allele 0, likely to be 0
reconstruction(la = 0, ra = 1, ld = 0.02, rd = 0.18)
## close to marker with allele 1, unlikely to be 0
reconstruction(la = 0, ra = 1, ld = 0.18, rd = 0.02)
mahendra-mariadassou/L1fdvGenetics documentation built on May 20, 2021, 10:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Reconstruct allele based on flanking markers
Usage
1 | reconstruction(la, ra, ld, rd)
|
Arguments
la |
Allele (0/1) at left flanking marker |
ra |
Allele (0/1) at right flanking marker |
ld |
Distance (in Morgans) to left flanking marker |
rd |
Distance (in Morgans) to right flanking marker |
Value
Probability of allele 0 at given position
Examples
1 2 3 4 | ## close to marker with allele 0, likely to be 0
reconstruction(la = 0, ra = 1, ld = 0.02, rd = 0.18)
## close to marker with allele 1, unlikely to be 0
reconstruction(la = 0, ra = 1, ld = 0.18, rd = 0.02)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.